RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 TPCN1Q9ULQ1 816 aa13.12□□□□□ -0.31
COL28A1-203ENST00000435823 MKI67P46013 3256 aaKnown RBP13.12□□□□□ -0.31
COL28A1-203ENST00000435823 A0A0U1RQG5 324 aaPredicted RBP13.11□□□□□ -0.31
COL28A1-203ENST00000435823 FIBPO43427 364 aa13.11□□□□□ -0.31
COL28A1-203ENST00000435823 KPNA6O60684 536 aa13.11□□□□□ -0.31
COL28A1-203ENST00000435823 RGS20O76081 388 aa13.11□□□□□ -0.31
COL28A1-203ENST00000435823 MYL3P08590 195 aa13.11□□□□□ -0.31
COL28A1-203ENST00000435823 TGFB3P10600 412 aa13.11□□□□□ -0.31
COL28A1-203ENST00000435823 RBM25P49756 843 aaKnown RBP13.11□□□□□ -0.31
COL28A1-203ENST00000435823 MRPS9P82933 396 aaKnown RBP13.11□□□□□ -0.31
COL28A1-203ENST00000435823 LAMC2Q13753 1193 aa13.11□□□□□ -0.31
COL28A1-203ENST00000435823 MCTP2Q6DN12 878 aa13.11□□□□□ -0.31
COL28A1-203ENST00000435823 CXCL17Q6UXB2 119 aa13.11□□□□□ -0.31
COL28A1-203ENST00000435823 DHX37Q8IY37 1157 aaKnown RBP13.11□□□□□ -0.31
COL28A1-203ENST00000435823 BICD2Q8TD16 824 aa13.11□□□□□ -0.31
COL28A1-203ENST00000435823 INPP4AQ96PE3 977 aaPredicted RBP13.11□□□□□ -0.31
COL28A1-203ENST00000435823 ANO3Q9BYT9 981 aa13.11□□□□□ -0.31
COL28A1-203ENST00000435823 ZMYND12Q9H0C1 365 aa13.11□□□□□ -0.31
COL28A1-203ENST00000435823 SH3GLB2Q9NR46 395 aa13.11□□□□□ -0.31
COL28A1-203ENST00000435823 RTEL1Q9NZ71 1219 aa13.11□□□□□ -0.31
COL28A1-203ENST00000435823 ZMYND8Q9ULU4 1186 aaPredicted RBP13.11□□□□□ -0.31
COL28A1-203ENST00000435823 MROH7Q68CQ1 1323 aa13.11□□□□□ -0.31
COL28A1-203ENST00000435823 A6NJR5 290 aa13.1□□□□□ -0.31
COL28A1-203ENST00000435823 PQBP1O60828 265 aaKnown RBP13.1□□□□□ -0.31
COL28A1-203ENST00000435823 ARHGAP1Q07960 439 aa13.1□□□□□ -0.31
COL28A1-203ENST00000435823 CDHR1Q96JP9 859 aa13.1□□□□□ -0.31
COL28A1-203ENST00000435823 MTG1Q9BT17 334 aaPredicted RBP13.1□□□□□ -0.31
COL28A1-203ENST00000435823 SEZ6LQ9BYH1 1024 aa13.1□□□□□ -0.31
COL28A1-203ENST00000435823 VPS54Q9P1Q0 977 aa13.1□□□□□ -0.31
COL28A1-203ENST00000435823 SPATA31C2B4DYI2 1134 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 ARVCFO00192 962 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 GGPS1O95749 300 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 MMP3P08254 477 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 SYN1P17600 705 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 UBA1P22314 1058 aaKnown RBP13.09□□□□□ -0.31
COL28A1-203ENST00000435823 ICAM3P32942 547 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 CLK2P49760 499 aaKnown RBP13.09□□□□□ -0.31
COL28A1-203ENST00000435823 NLRP5P59047 1200 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 PURAQ00577 322 aaKnown RBP13.09□□□□□ -0.31
COL28A1-203ENST00000435823 TLE2Q04725 743 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 NEDD9Q14511 834 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 ME3Q16798 604 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 CELF3Q5SZQ8 465 aaKnown RBP13.09□□□□□ -0.31
COL28A1-203ENST00000435823 JAKMIP3Q5VZ66 844 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 FAM177A1Q8N128 213 aaPredicted RBP13.09□□□□□ -0.31
COL28A1-203ENST00000435823 REXO1Q8N1G1 1221 aaKnown RBP13.09□□□□□ -0.31
COL28A1-203ENST00000435823 AFG1LQ8WV93 481 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 GTF3C6Q969F1 213 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 EMID1Q96A84 441 aaPredicted RBP13.09□□□□□ -0.31
COL28A1-203ENST00000435823 GPRASP2Q96D09 838 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 PGBD1Q96JS3 809 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 TOX2Q96NM4 488 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 MLXIPQ9HAP2 919 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 PRDM5Q9NQX1 630 aaPredicted RBP13.09□□□□□ -0.31
COL28A1-203ENST00000435823 TMEM260Q9NX78 707 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 STK36Q9NRP7 1315 aa13.09□□□□□ -0.31
COL28A1-203ENST00000435823 DCDC2CA8MYV0 355 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 TLR3O15455 904 aaKnown RBP13.08□□□□□ -0.32
COL28A1-203ENST00000435823 SORBS3O60504 671 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 CLTBP09497 229 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 XBP1P17861 261 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 MTMR1Q13613 665 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 ITGA7Q13683 1181 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 RABEP1Q15276 862 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 DGKDQ16760 1214 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 ANKRD33Q7Z3H0 272 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 NECAB1Q8N987 351 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 GIMAP8Q8ND71 665 aaPredicted RBP13.08□□□□□ -0.32
COL28A1-203ENST00000435823 PPTC7Q8NI37 304 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 WASF1Q92558 559 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 SPATA33Q96N06 139 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 METRNQ9UJH8 293 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 LIMCH1Q9UPQ0 1083 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 UBIAD1Q9Y5Z9 338 aa13.08□□□□□ -0.32
COL28A1-203ENST00000435823 NOP56O00567 594 aaKnown RBP13.07□□□□□ -0.32
COL28A1-203ENST00000435823 MAFGO15525 162 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 ST18O60284 1047 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 LARGE1O95461 756 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 ZNF76P36508 570 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 SREBF1P36956 1147 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 CDK7P50613 346 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 PSMC6P62333 389 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 SP2Q02086 613 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 MYSM1Q5VVJ2 828 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 GALNT17Q6IS24 598 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 METTL7BQ6UX53 244 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 IL27Q8NEV9 243 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 ZSCAN31Q96LW9 406 aaPredicted RBP13.07□□□□□ -0.32
COL28A1-203ENST00000435823 KIF2CQ99661 725 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 LBHD1Q9BQE6 289 aaPredicted RBP13.07□□□□□ -0.32
COL28A1-203ENST00000435823 SENP7Q9BQF6 1050 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 JADE2Q9NQC1 790 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 PDLIM7Q9NR12 457 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 ORC3Q9UBD5 711 aaPredicted RBP13.07□□□□□ -0.32
COL28A1-203ENST00000435823 MYH7BA7E2Y1 1941 aa13.07□□□□□ -0.32
COL28A1-203ENST00000435823 CEP290O15078 2479 aa13.06□□□□□ -0.32
COL28A1-203ENST00000435823 ITGB5P18084 799 aa13.06□□□□□ -0.32
COL28A1-203ENST00000435823 ARHGAP4P98171 946 aa13.06□□□□□ -0.32
COL28A1-203ENST00000435823 SEMA3FQ13275 785 aa13.06□□□□□ -0.32
COL28A1-203ENST00000435823 CEP55Q53EZ4 464 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms