RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 MLANAQ16655 118 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 OLFML2BQ68BL8 750 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 ZCCHC8Q6NZY4 707 aaKnown RBP5.95□□□□□ -1.46
USP40-204ENST00000427947 C16orf59Q7L2K0 433 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 TMC6Q7Z403 805 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 DDX53Q86TM3 631 aaKnown RBP5.95□□□□□ -1.46
USP40-204ENST00000427947 CISD2Q8N5K1 135 aaKnown RBP5.95□□□□□ -1.46
USP40-204ENST00000427947 IGSF22Q8N9C0 903 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 SEC14L1Q92503 715 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 CELF4Q9BZC1 486 aaKnown RBP5.95□□□□□ -1.46
USP40-204ENST00000427947 SLC6A20Q9NP91 592 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 DCP1AQ9NPI6 582 aaPredicted RBP5.95□□□□□ -1.46
USP40-204ENST00000427947 FAM53CQ9NYF3 392 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 CBLCQ9ULV8 474 aa5.95□□□□□ -1.46
USP40-204ENST00000427947 HGSO14964 777 aaPredicted RBP5.94□□□□□ -1.46
USP40-204ENST00000427947 NKRFO15226 690 aaKnown RBP eCLIP5.94□□□□□ -1.46
USP40-204ENST00000427947 MAFKO60675 156 aa5.94□□□□□ -1.46
USP40-204ENST00000427947 PDE6AP16499 860 aa5.94□□□□□ -1.46
USP40-204ENST00000427947 KCNA6P17658 529 aa5.94□□□□□ -1.46
USP40-204ENST00000427947 KRT15P19012 456 aa5.94□□□□□ -1.46
USP40-204ENST00000427947 VIPR1P32241 457 aa5.94□□□□□ -1.46
USP40-204ENST00000427947 NEK4P51957 841 aa5.94□□□□□ -1.46
USP40-204ENST00000427947 YBX1P67809 324 aaKnown RBP5.94□□□□□ -1.46
USP40-204ENST00000427947 PRR5P85299 388 aa5.94□□□□□ -1.46
USP40-204ENST00000427947 EMC4Q5J8M3 183 aa5.94□□□□□ -1.46
USP40-204ENST00000427947 PIK3R6Q5UE93 754 aa5.94□□□□□ -1.46
USP40-204ENST00000427947 MILR1Q7Z6M3 343 aa5.94□□□□□ -1.46
USP40-204ENST00000427947 TARS2Q9BW92 718 aaKnown RBP5.94□□□□□ -1.46
USP40-204ENST00000427947 ZNF552Q9H707 407 aaPredicted RBP5.94□□□□□ -1.46
USP40-204ENST00000427947 KCNK12Q9HB15 430 aa5.94□□□□□ -1.46
USP40-204ENST00000427947 SAMD15Q9P1V8 674 aa5.94□□□□□ -1.46
USP40-204ENST00000427947 PALD1Q9ULE6 856 aa5.94□□□□□ -1.46
USP40-204ENST00000427947 M0R2C6 588 aa5.93□□□□□ -1.46
USP40-204ENST00000427947 PDE8AO60658 829 aa5.93□□□□□ -1.46
USP40-204ENST00000427947 KPNA6O60684 536 aa5.93□□□□□ -1.46
USP40-204ENST00000427947 GLRX3O76003 335 aaKnown RBP5.93□□□□□ -1.46
USP40-204ENST00000427947 CANXP27824 592 aaKnown RBP5.93□□□□□ -1.46
USP40-204ENST00000427947 SRSF3P84103 164 aaKnown RBP5.93□□□□□ -1.46
USP40-204ENST00000427947 ZNF200P98182 395 aaPredicted RBP5.93□□□□□ -1.46
USP40-204ENST00000427947 CRY1Q16526 586 aa5.93□□□□□ -1.46
USP40-204ENST00000427947 CFAP100Q494V2 611 aa5.93□□□□□ -1.46
USP40-204ENST00000427947 TMEM177Q53S58 311 aa5.93□□□□□ -1.46
USP40-204ENST00000427947 ARHGAP36Q6ZRI8 547 aa5.93□□□□□ -1.46
USP40-204ENST00000427947 UBE2R2Q712K3 238 aaPredicted RBP5.93□□□□□ -1.46
USP40-204ENST00000427947 PANK1Q8TE04 598 aa5.93□□□□□ -1.46
USP40-204ENST00000427947 BCAS3Q9H6U6 928 aa5.93□□□□□ -1.46
USP40-204ENST00000427947 MYOTQ9UBF9 498 aa5.93□□□□□ -1.46
USP40-204ENST00000427947 DSEQ9UL01 958 aa5.93□□□□□ -1.46
USP40-204ENST00000427947 ZNF652Q9Y2D9 606 aa5.93□□□□□ -1.46
USP40-204ENST00000427947 PRKAB1Q9Y478 270 aa5.93□□□□□ -1.46
USP40-204ENST00000427947 PCDHB4Q9Y5E5 795 aa5.93□□□□□ -1.46
USP40-204ENST00000427947 A0A087X0B3 334 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 TCRBV5S4A2TA0A5A2 114 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 HRKO00198 91 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 SLC27A2O14975 620 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 TADA3O75528 432 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 ZBTB7AO95365 584 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 MASP1P48740 699 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 JAM2P57087 298 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 SLC9A5Q14940 896 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 GPR19Q15760 415 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 HABP4Q5JVS0 413 aaKnown RBP5.92□□□□□ -1.46
USP40-204ENST00000427947 RNF187Q5TA31 235 aaPredicted RBP5.92□□□□□ -1.46
USP40-204ENST00000427947 CDCA2Q69YH5 1023 aaPredicted RBP5.92□□□□□ -1.46
USP40-204ENST00000427947 TMEM132EQ6IEE7 984 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 EP400NLQ6ZTU2 488 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 OSTM1Q86WC4 334 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 RBM12BQ8IXT5 1001 aaKnown RBP5.92□□□□□ -1.46
USP40-204ENST00000427947 PPM1KQ8N3J5 372 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 UHMK1Q8TAS1 419 aaKnown RBP5.92□□□□□ -1.46
USP40-204ENST00000427947 DDX1Q92499 740 aaKnown RBP5.92□□□□□ -1.46
USP40-204ENST00000427947 ALG3Q92685 438 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 TSPAN17Q96FV3 270 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 WNK4Q96J92 1243 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 SMOC1Q9H4F8 434 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 SIRT5Q9NXA8 310 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 PLA2G2DQ9UNK4 145 aa5.92□□□□□ -1.46
USP40-204ENST00000427947 MYOCOSA0A1B0GUC4 107 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 FAM83GA6ND36 823 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 GSG1L2A8MUP6 293 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 ZNF561-AS1K7EIQ3 104 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 KCNK3O14649 394 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 NPTXRO95502 500 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 AMY2AP04746 511 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 AMY2BP19961 511 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 CYP4F22Q6NT55 531 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 OVCH1Q7RTY7 1134 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 FILIP1Q7Z7B0 1213 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 PTRH1Q86Y79 214 aaKnown RBP5.91□□□□□ -1.46
USP40-204ENST00000427947 PHOSPHO1Q8TCT1 267 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 CD244Q9BZW8 370 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 MCOLN1Q9GZU1 580 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 SMURF1Q9HCE7 757 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 SRPK3Q9UPE1 567 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 NUB1Q9Y5A7 615 aa5.91□□□□□ -1.46
USP40-204ENST00000427947 TCRBV5S2A0A599 114 aa5.9□□□□□ -1.46
USP40-204ENST00000427947 PEX10O60683 326 aa5.9□□□□□ -1.46
USP40-204ENST00000427947 LTFP02788 710 aa5.9□□□□□ -1.46
USP40-204ENST00000427947 POU3F2P20265 443 aaPredicted RBP5.9□□□□□ -1.46
USP40-204ENST00000427947 LACTBP83111 547 aaPredicted RBP5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms