RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 USP26Q9BXU7 913 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 PAPOLAP51003 745 aaKnown RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 RTKN2Q8IZC4 609 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 CCDC127Q96BQ5 260 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 THRAP3Q9Y2W1 955 aaKnown RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 SNX2O60749 519 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 YWHAHQ04917 246 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 SLFN12LQ6IEE8 588 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 LRRC31Q6UY01 552 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 ZBTB38Q8NAP3 1195 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 PNMA1Q8ND90 353 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 CFAP61Q8NHU2 1237 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 SCG3Q8WXD2 468 aaKnown RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 MTRQ99707 1265 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 NLRC4Q9NPP4 1024 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 TMEM232C9JQI7 657 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 GCFC2P16383 781 aaKnown RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 MAPK4P31152 587 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 ZNF467Q7Z7K2 595 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 LRRC47Q8N1G4 583 aaKnown RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 IFT43Q96FT9 208 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 KDM4CQ9H3R0 1056 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 KRT82Q9NSB4 513 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 MAP3K20Q9NYL2 800 aaKnown RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 SRPRBQ9Y5M8 271 aaKnown RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 PRDM1O75626 825 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 ADAM9Q13443 819 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 ANKS3Q6ZW76 656 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 UBE2Q2Q8WVN8 375 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 PAWRQ96IZ0 340 aaKnown RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 VPS39Q96JC1 886 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 OLFML3Q9NRN5 406 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 HACD3Q9P035 362 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 FAF1Q9UNN5 650 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 NFE2L3Q9Y4A8 694 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 ZMYM6O95789 1325 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 MEIS1O00470 390 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 RASGRF2O14827 1237 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 MSH2P43246 934 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 TFAMQ00059 246 aaKnown RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 ABHD8Q96I13 439 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 DHX36Q9H2U1 1008 aaKnown RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 QTRT2Q9H974 415 aaKnown RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 SLAIN2Q9P270 581 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 hCG_1984214I3L0E3 225 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 CREB3O43889 395 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 MOCS3O95396 460 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 SNX1Q13596 522 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 DOK7Q18PE1 504 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 FAM47AQ5JRC9 791 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 MFSD14CQ5VZR4 134 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 KRT39Q6A163 491 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 DARS2Q6PI48 645 aaKnown RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 PSMB7Q99436 277 aa7.41□□□□□ -1.22
SCN1A-204ENST00000423058 UPF3AQ9H1J1 476 aaKnown RBP7.41□□□□□ -1.22
SCN1A-204ENST00000423058 SUN1O94901 812 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 MYL3P08590 195 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 SLC8A1P32418 973 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 BTDP43251 543 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 SCNN1DP51172 638 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 IMPG1Q17R60 797 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 STX19Q8N4C7 294 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 C7orf31Q8N865 590 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 SH3TC2Q8TF17 1288 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 ZNF526Q8TF50 670 aaPredicted RBP7.4□□□□□ -1.22
SCN1A-204ENST00000423058 ZNF594Q96JF6 807 aaPredicted RBP7.4□□□□□ -1.22
SCN1A-204ENST00000423058 CALR3Q96L12 384 aaKnown RBP7.4□□□□□ -1.22
SCN1A-204ENST00000423058 CARD6Q9BX69 1037 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 TNFAIP2Q03169 654 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 TRIM67Q6ZTA4 783 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 UIMC1Q96RL1 719 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 EYA1Q99502 592 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 TMEM106CQ9BVX2 250 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 FSD1LQ9BXM9 530 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 MRPL40Q9NQ50 206 aaKnown RBP7.4□□□□□ -1.22
SCN1A-204ENST00000423058 DNAJC24Q6P3W2 148 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 CDC26Q8NHZ8 85 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 CHCHD3Q9NX63 227 aaKnown RBP7.4□□□□□ -1.22
SCN1A-204ENST00000423058 ZNF804BA4D1E1 1349 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 KIF28PB7ZC32 967 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 SCG2P13521 617 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 TCP1P17987 556 aaKnown RBP7.4□□□□□ -1.22
SCN1A-204ENST00000423058 MED21Q13503 144 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 MEI1Q5TIA1 1274 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 CC2D2BQ6DHV5 1058 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 PCGF5Q86SE9 256 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 PLEKHM2Q8IWE5 1019 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 RASEFQ8IZ41 740 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 TRIM54Q9BYV2 358 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 SUN2Q9UH99 717 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 CLCA2Q9UQC9 943 aa7.4□□□□□ -1.22
SCN1A-204ENST00000423058 POLR3AO14802 1390 aaPredicted RBP7.4□□□□□ -1.23
SCN1A-204ENST00000423058 UBXN8O00124 270 aa7.4□□□□□ -1.23
SCN1A-204ENST00000423058 TAF1BQ53T94 588 aaPredicted RBP7.4□□□□□ -1.23
SCN1A-204ENST00000423058 ZSCAN32Q9NX65 697 aa7.4□□□□□ -1.23
SCN1A-204ENST00000423058 EEF1B2P24534 225 aaKnown RBP7.4□□□□□ -1.23
SCN1A-204ENST00000423058 SEPT2Q15019 361 aa7.4□□□□□ -1.23
SCN1A-204ENST00000423058 TTC19Q6DKK2 380 aaPredicted RBP7.4□□□□□ -1.23
SCN1A-204ENST00000423058 RWDD4Q6NW29 188 aaKnown RBP7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms