RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CD44P16070 742 aaKnown RBP16.61■□□□□ 0.25
USP4-203ENST00000415188 PBX1P40424 430 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 PAK1Q13153 545 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 SLC35G1Q2M3R5 365 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 PPP4R3BQ5MIZ7 849 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 TYW1BQ6NUM6 668 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 APTXQ7Z2E3 356 aaKnown RBP16.61■□□□□ 0.25
USP4-203ENST00000415188 TC2NQ8N9U0 490 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 SLAIN1Q8ND83 568 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 SRRTQ9BXP5 876 aaKnown RBP16.61■□□□□ 0.25
USP4-203ENST00000415188 GINM1Q9NU53 330 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 SEC63Q9UGP8 760 aaKnown RBP16.61■□□□□ 0.25
USP4-203ENST00000415188 LIMA1Q9UHB6 759 aaKnown RBP16.61■□□□□ 0.25
USP4-203ENST00000415188 SERPINB13Q9UIV8 391 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 AKR1B15C9JRZ8 316 aaPredicted RBP16.61■□□□□ 0.25
USP4-203ENST00000415188 RPN1P04843 607 aaKnown RBP16.61■□□□□ 0.25
USP4-203ENST00000415188 GCLCP48506 637 aaPredicted RBP16.61■□□□□ 0.25
USP4-203ENST00000415188 IRX3P78415 501 aaPredicted RBP16.61■□□□□ 0.25
USP4-203ENST00000415188 NONOQ15233 471 aaKnown RBP eCLIP16.61■□□□□ 0.25
USP4-203ENST00000415188 RRAGBQ5VZM2 374 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 TATDN1Q6P1N9 297 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 EHD4Q9H223 541 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 SWAP70Q9UH65 585 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 CTNND2Q9UQB3 1225 aa16.61■□□□□ 0.25
USP4-203ENST00000415188 C19orf81C9J6K1 198 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 HOXA7P31268 230 aaPredicted RBP16.6■□□□□ 0.25
USP4-203ENST00000415188 SHMT1P34896 483 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 NAPAP54920 295 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 UBXN2AP68543 259 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 TRIM14Q14142 442 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 ASPRV1Q53RT3 343 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 KLHL10Q6JEL2 608 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 PPP1R18Q6NYC8 613 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 PPFIBP1Q86W92 1011 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 HOMER1Q86YM7 354 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 REXO1L1PQ8IX06 675 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 COA7Q96BR5 231 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 P2RX7Q99572 595 aaKnown RBP16.6■□□□□ 0.25
USP4-203ENST00000415188 RNF208Q9H0X6 261 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 UNC93B1Q9H1C4 597 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 RIOX1Q9H6W3 641 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 EMILIN3Q9NT22 766 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 PPP2R2CQ9Y2T4 447 aa16.6■□□□□ 0.25
USP4-203ENST00000415188 LRRC10BA6NIK2 292 aa16.59■□□□□ 0.25
USP4-203ENST00000415188 INHAP05111 366 aa16.59■□□□□ 0.25
USP4-203ENST00000415188 TPM1P09493 284 aa16.59■□□□□ 0.25
USP4-203ENST00000415188 UBA7P41226 1012 aa16.59■□□□□ 0.25
USP4-203ENST00000415188 PPP1R2P41236 205 aa16.59■□□□□ 0.25
USP4-203ENST00000415188 GABPAQ06546 454 aa16.59■□□□□ 0.25
USP4-203ENST00000415188 IRF5Q13568 498 aa16.59■□□□□ 0.25
USP4-203ENST00000415188 ZYXQ15942 572 aaKnown RBP16.59■□□□□ 0.25
USP4-203ENST00000415188 INF2Q27J81 1249 aa16.59■□□□□ 0.25
USP4-203ENST00000415188 CERKLQ49MI3 558 aaPredicted RBP16.59■□□□□ 0.25
USP4-203ENST00000415188 SYT10Q6XYQ8 523 aa16.59■□□□□ 0.25
USP4-203ENST00000415188 CCDC47Q96A33 483 aaKnown RBP16.59■□□□□ 0.25
USP4-203ENST00000415188 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.59■□□□□ 0.253e-7■■□□□ 13.3
USP4-203ENST00000415188 GREB1LQ9C091 1923 aaPredicted RBP16.59■□□□□ 0.25
USP4-203ENST00000415188 DOCK3Q8IZD9 2030 aa16.58■□□□□ 0.25
USP4-203ENST00000415188 ADAMTS3O15072 1205 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 GJB1P08034 283 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 OR52Z1P0C646 297 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 FECHP22830 423 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 HERVK_113P62684 666 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 STIM1Q13586 685 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 ABCB5Q2M3G0 1257 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 USP17L2Q6R6M4 530 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 CNGA4Q8IV77 575 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 RASGRP4Q8TDF6 673 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 PXYLP1Q8TE99 480 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 NOC3LQ8WTT2 800 aaKnown RBP16.58■□□□□ 0.24
USP4-203ENST00000415188 CEP95Q96GE4 821 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 FEZ1Q99689 392 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 MTRQ99707 1265 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 TXNRD2Q9NNW7 524 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 KBTBD4Q9NVX7 518 aa16.58■□□□□ 0.24
USP4-203ENST00000415188 ZNF215Q9UL58 517 aaPredicted RBP16.58■□□□□ 0.24
USP4-203ENST00000415188 IGKV6D-41A0A0C4DH26 115 aa16.57■□□□□ 0.24
USP4-203ENST00000415188 SMCO2A6NFE2 343 aa16.57■□□□□ 0.24
USP4-203ENST00000415188 GJA8P48165 433 aa16.57■□□□□ 0.24
USP4-203ENST00000415188 STX17P56962 302 aa16.57■□□□□ 0.24
USP4-203ENST00000415188 TRIM65Q6PJ69 517 aa16.57■□□□□ 0.24
USP4-203ENST00000415188 NEK8Q86SG6 692 aa16.57■□□□□ 0.24
USP4-203ENST00000415188 IGSF22Q8N9C0 903 aa16.57■□□□□ 0.24
USP4-203ENST00000415188 ACER1Q8TDN7 264 aa16.57■□□□□ 0.24
USP4-203ENST00000415188 NELFBQ8WX92 580 aa16.57■□□□□ 0.24
USP4-203ENST00000415188 BLZF1Q9H2G9 400 aa16.57■□□□□ 0.24
USP4-203ENST00000415188 MORF4L1Q9UBU8 362 aa16.57■□□□□ 0.24
USP4-203ENST00000415188 RHOBTB3O94955 611 aa16.56■□□□□ 0.24
USP4-203ENST00000415188 SNHG28P0DPA3 235 aa16.56■□□□□ 0.24
USP4-203ENST00000415188 CASP1P29466 404 aa16.56■□□□□ 0.24
USP4-203ENST00000415188 KARSQ15046 597 aaKnown RBP16.56■□□□□ 0.24
USP4-203ENST00000415188 HSP90AA4PQ58FG1 418 aa16.56■□□□□ 0.24
USP4-203ENST00000415188 POTEEQ6S8J3 1075 aa16.56■□□□□ 0.24
USP4-203ENST00000415188 ADSSL1Q8N142 457 aa16.56■□□□□ 0.24
USP4-203ENST00000415188 ZNF397Q8NF99 534 aaPredicted RBP16.56■□□□□ 0.24
USP4-203ENST00000415188 RASSF8Q8NHQ8 419 aa16.56■□□□□ 0.24
USP4-203ENST00000415188 TMEM60Q9H2L4 133 aa16.56■□□□□ 0.24
USP4-203ENST00000415188 MTMR4Q9NYA4 1195 aa16.56■□□□□ 0.24
USP4-203ENST00000415188 RBPJLQ9UBG7 517 aa16.56■□□□□ 0.24
USP4-203ENST00000415188 DNAI1Q9UI46 699 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms