RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 OSBPL5Q9H0X9 879 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-205ENST00000414879 TLR3O15455 904 aaKnown RBP13.1□□□□□ -0.31
PTPRF-205ENST00000414879 THAP12O43422 761 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 PKP1Q13835 747 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 UNC13DQ70J99 1090 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 AGBL3Q8NEM8 1001 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 UBE2Q2Q8WVN8 375 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 TIPINQ9BVW5 301 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 SUGCTQ9HAC7 445 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 PCDHA6Q9UN73 950 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 PCDHA8Q9Y5H6 950 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 SAR1BQ9Y6B6 198 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 WDR64B1ANS9 1081 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 EIF3CLB5ME19 914 aaKnown RBP13.1□□□□□ -0.31
PTPRF-205ENST00000414879 MYL7Q01449 175 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 CYB5R4Q7L1T6 521 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 EIF3CQ99613 913 aaKnown RBP13.1□□□□□ -0.31
PTPRF-205ENST00000414879 NWD1Q149M9 1564 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 GNAT1P11488 350 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 MAN1A1P33908 653 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 MCM6Q14566 821 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 UTP14CQ5TAP6 766 aaKnown RBP13.1□□□□□ -0.31
PTPRF-205ENST00000414879 TYW1BQ6NUM6 668 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 CCDC170Q8IYT3 715 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 NLRC4Q9NPP4 1024 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 EMILIN3Q9NT22 766 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 ANAPC4Q9UJX5 808 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 UBN2Q6ZU65 1347 aa13.1□□□□□ -0.31
PTPRF-205ENST00000414879 GOLGA6CA6NDK9 693 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 GOLGA6BA6NDN3 693 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 F5H6K3 240 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 PLEKHA8P1O95397 391 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 GOLGA6DP0CG33 693 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 KLRC3Q07444 240 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 FNBP4Q8N3X1 1017 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-205ENST00000414879 BBOF1Q8ND07 529 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 BPIFA3Q9BQP9 254 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 VPS33BQ9H267 617 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 GOLGA6AQ9NYA3 693 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 RNF14Q9UBS8 474 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 DAAM1Q9Y4D1 1078 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 E7EVH7 732 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 EN1Q05925 392 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-205ENST00000414879 ARHGAP44Q17R89 818 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 FAM47CQ5HY64 1035 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 RIOK1Q9BRS2 568 aaKnown RBP13.09□□□□□ -0.31
PTPRF-205ENST00000414879 MAN1B1Q9UKM7 699 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 MEGF6O75095 1541 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 CHD2O14647 1828 aaKnown RBP13.09□□□□□ -0.31
PTPRF-205ENST00000414879 PRELPP51888 382 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-205ENST00000414879 FAM151AQ8WW52 585 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 CCDC97Q96F63 343 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-205ENST00000414879 DAGLAQ9Y4D2 1042 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 PCDHB6Q9Y5E3 794 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 COL5A2P05997 1499 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-205ENST00000414879 USP17L15C9J2P7 530 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 USP17L13C9JLJ4 530 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 USP17L11C9JVI0 530 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 USP17L18D6R9N7 530 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 USP17L22D6RA61 530 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 USP17L17D6RBQ6 530 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 USP17L19D6RCP7 530 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 USP17L20D6RJB6 530 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 WDR46O15213 610 aaKnown RBP13.09□□□□□ -0.31
PTPRF-205ENST00000414879 CEP104O60308 925 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 CD2BP2O95400 341 aaKnown RBP13.09□□□□□ -0.31
PTPRF-205ENST00000414879 USP17L24Q0WX57 530 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 INTS5Q6P9B9 1019 aaKnown RBP13.09□□□□□ -0.31
PTPRF-205ENST00000414879 RASGRP4Q8TDF6 673 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 IFT81Q8WYA0 676 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 PAGE5Q96GU1 130 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 FAM193BQ96PV7 902 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-205ENST00000414879 WRNIP1Q96S55 665 aa13.09□□□□□ -0.31
PTPRF-205ENST00000414879 EPN1Q9Y6I3 576 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-205ENST00000414879 ZNF500O60304 480 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-205ENST00000414879 LARGE1O95461 756 aa13.08□□□□□ -0.32
PTPRF-205ENST00000414879 PLCG1P19174 1290 aa13.08□□□□□ -0.32
PTPRF-205ENST00000414879 SLC15A2Q16348 729 aa13.08□□□□□ -0.32
PTPRF-205ENST00000414879 U2AF1L4Q8WU68 220 aaKnown RBP13.08□□□□□ -0.32
PTPRF-205ENST00000414879 CEP63Q96MT8 703 aa13.08□□□□□ -0.32
PTPRF-205ENST00000414879 RPS6KC1Q96S38 1066 aa13.08□□□□□ -0.32
PTPRF-205ENST00000414879 NCAPGQ9BPX3 1015 aa13.08□□□□□ -0.32
PTPRF-205ENST00000414879 ZNF277Q9NRM2 450 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-205ENST00000414879 SARNPP82979 210 aaKnown RBP13.08□□□□□ -0.32
PTPRF-205ENST00000414879 MIGA2Q7L4E1 593 aa13.08□□□□□ -0.32
PTPRF-205ENST00000414879 LRRC8AQ8IWT6 810 aa13.08□□□□□ -0.32
PTPRF-205ENST00000414879 PLCB1Q9NQ66 1216 aa13.08□□□□□ -0.32
PTPRF-205ENST00000414879 ETF1P62495 437 aaKnown RBP13.08□□□□□ -0.32
PTPRF-205ENST00000414879 RSBN1LQ6PCB5 846 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-205ENST00000414879 SND1Q7KZF4 910 aaKnown RBP eCLIP13.08□□□□□ -0.32
PTPRF-205ENST00000414879 SAMD3Q8N6K7 520 aa13.08□□□□□ -0.32
PTPRF-205ENST00000414879 NKIRAS1Q9NYS0 192 aa13.08□□□□□ -0.32
PTPRF-205ENST00000414879 CYP2D6P10635 497 aa13.08□□□□□ -0.32
PTPRF-205ENST00000414879 LMNB2Q03252 620 aa13.08□□□□□ -0.32
PTPRF-205ENST00000414879 PDIA5Q14554 519 aa13.08□□□□□ -0.32
PTPRF-205ENST00000414879 PDXDC2PQ6P474 469 aa13.08□□□□□ -0.32
PTPRF-205ENST00000414879 GPR75-ASB3A0A0A6YYF3 556 aa13.07□□□□□ -0.32
PTPRF-205ENST00000414879 TBX3O15119 743 aa13.07□□□□□ -0.32
PTPRF-205ENST00000414879 MED7O43513 233 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms