RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ARHGAP1Q07960 439 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 SSRP1Q08945 709 aaKnown RBP7.32□□□□□ -1.24
USP54-202ENST00000413442 SLC35G1Q2M3R5 365 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 TRIM60Q495X7 471 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 METTL7BQ6UX53 244 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 CXCL17Q6UXB2 119 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 SEPT14Q6ZU15 432 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 ZNF710Q8N1W2 664 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 RETREG2Q8NC44 543 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 CAGE1Q8TC20 777 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 PURBQ96QR8 312 aaKnown RBP7.32□□□□□ -1.24
USP54-202ENST00000413442 NAP1L4Q99733 375 aaKnown RBP7.32□□□□□ -1.24
USP54-202ENST00000413442 JADE2Q9NQC1 790 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 PDLIM7Q9NR12 457 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 FAM217BQ9NTX9 383 aaPredicted RBP7.32□□□□□ -1.24
USP54-202ENST00000413442 PDRG1Q9NUG6 133 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 COL20A1Q9P218 1284 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 TBX21Q9UL17 535 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 PCDHA6Q9UN73 950 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 PCDHA8Q9Y5H6 950 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 KAT6AQ92794 2004 aa7.32□□□□□ -1.24
USP54-202ENST00000413442 SCN10AQ9Y5Y9 1956 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 NFASCO94856 1347 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 TMEM265A0A087WTH1 108 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.31□□□□□ -1.24
USP54-202ENST00000413442 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.31□□□□□ -1.24
USP54-202ENST00000413442 HAS3O00219 553 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 NOP56O00567 594 aaKnown RBP7.31□□□□□ -1.24
USP54-202ENST00000413442 RGS20O76081 388 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 MMP3P08254 477 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 MYL3P08590 195 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 HOXA13P31271 388 aaPredicted RBP7.31□□□□□ -1.24
USP54-202ENST00000413442 CLK2P49760 499 aaKnown RBP7.31□□□□□ -1.24
USP54-202ENST00000413442 MRPS9P82933 396 aaKnown RBP7.31□□□□□ -1.24
USP54-202ENST00000413442 BEX3Q00994 111 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 FPGSQ05932 587 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 RBL2Q08999 1139 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 APOBRQ0VD83 1088 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 NTRK3Q16288 839 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 USP17L6PQ6QN14 398 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 HEATR3Q7Z4Q2 680 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 CCDC82Q8N4S0 544 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 C7orf31Q8N865 590 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 SEPT1Q8WYJ6 367 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 ZSCAN31Q96LW9 406 aaPredicted RBP7.31□□□□□ -1.24
USP54-202ENST00000413442 SPATA33Q96N06 139 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 MXRA8Q9BRK3 442 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 MYL10Q9BUA6 226 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 LRRC2Q9BYS8 371 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 UPF2Q9HAU5 1272 aaKnown RBP7.31□□□□□ -1.24
USP54-202ENST00000413442 TBC1D22BQ9NU19 505 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 DAXXQ9UER7 740 aaPredicted RBP7.31□□□□□ -1.24
USP54-202ENST00000413442 ZNF215Q9UL58 517 aaPredicted RBP7.31□□□□□ -1.24
USP54-202ENST00000413442 ZMYND8Q9ULU4 1186 aaPredicted RBP7.31□□□□□ -1.24
USP54-202ENST00000413442 UBIAD1Q9Y5Z9 338 aa7.31□□□□□ -1.24
USP54-202ENST00000413442 CNTNAP5Q8WYK1 1306 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 TRIM43BA6NCK2 446 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 RRN3P2A6NIE6 340 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 H3BRB1 525 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 STXBP3O00186 592 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 MEIS1O00470 390 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 PQBP1O60828 265 aaKnown RBP7.3□□□□□ -1.24
USP54-202ENST00000413442 EFCAB14O75071 495 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 SLC34A2O95436 690 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 GGPS1O95749 300 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 F2P00734 622 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 FGBP02675 491 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 ACTN1P12814 892 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 CDC27P30260 824 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 CIITAP33076 1130 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 SREBF1P36956 1147 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 SMAD3P84022 425 aaKnown RBP7.3□□□□□ -1.24
USP54-202ENST00000413442 SETQ01105 290 aaPredicted RBP7.3□□□□□ -1.24
USP54-202ENST00000413442 PTK7Q13308 1070 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 MTMR1Q13613 665 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 TOB2Q14106 344 aaPredicted RBP7.3□□□□□ -1.24
USP54-202ENST00000413442 LY6KQ17RY6 165 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 NBPF20Q3BBV1 942 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 CEP55Q53EZ4 464 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 PSRC1Q6PGN9 363 aaPredicted RBP7.3□□□□□ -1.24
USP54-202ENST00000413442 MOXD1Q6UVY6 613 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 RPAINQ86UA6 219 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 AFAP1L1Q8TED9 768 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 AFG1LQ8WV93 481 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 TRIM43Q96BQ3 446 aaPredicted RBP7.3□□□□□ -1.24
USP54-202ENST00000413442 SDF4Q9BRK5 362 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 SLKQ9H2G2 1235 aaPredicted RBP7.3□□□□□ -1.24
USP54-202ENST00000413442 HIPK3Q9H422 1215 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 SMARCAD1Q9H4L7 1026 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 TUT1Q9H6E5 874 aaKnown RBP7.3□□□□□ -1.24
USP54-202ENST00000413442 IL23AQ9NPF7 189 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 PRDM5Q9NQX1 630 aaPredicted RBP7.3□□□□□ -1.24
USP54-202ENST00000413442 NAP1L2Q9ULW6 460 aaPredicted RBP7.3□□□□□ -1.24
USP54-202ENST00000413442 NOD1Q9Y239 953 aa7.3□□□□□ -1.24
USP54-202ENST00000413442 GRIN2DO15399 1336 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 NRCAMQ92823 1304 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 STK36Q9NRP7 1315 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 LTBP2Q14767 1821 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 MYADML2A6NDP7 307 aa7.29□□□□□ -1.24
USP54-202ENST00000413442 PFKFB2O60825 505 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms