RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 MYCLP12524 364 aaPredicted RBP15.19■□□□□ 0.02
LIMS1-204ENST00000409441 USP11P51784 963 aa15.19■□□□□ 0.02
LIMS1-204ENST00000409441 PRMT2P55345 433 aa15.19■□□□□ 0.02
LIMS1-204ENST00000409441 ARHGAP4P98171 946 aa15.19■□□□□ 0.02
LIMS1-204ENST00000409441 IRF5Q13568 498 aa15.19■□□□□ 0.02
LIMS1-204ENST00000409441 SNW1Q13573 536 aaKnown RBP15.19■□□□□ 0.02
LIMS1-204ENST00000409441 CCL14Q16627 93 aa15.19■□□□□ 0.02
LIMS1-204ENST00000409441 MAMDC4Q6UXC1 1216 aa15.19■□□□□ 0.02
LIMS1-204ENST00000409441 CKAP2LQ8IYA6 745 aa15.19■□□□□ 0.02
LIMS1-204ENST00000409441 IL31RAQ8NI17 732 aa15.19■□□□□ 0.02
LIMS1-204ENST00000409441 MPHOSPH6Q99547 160 aaKnown RBP15.19■□□□□ 0.02
LIMS1-204ENST00000409441 TINF2Q9BSI4 451 aa15.19■□□□□ 0.02
LIMS1-204ENST00000409441 GOLPH3LQ9H4A5 285 aa15.19■□□□□ 0.02
LIMS1-204ENST00000409441 FLRT1Q9NZU1 646 aa15.19■□□□□ 0.02
LIMS1-204ENST00000409441 ZKSCAN5Q9Y2L8 839 aa15.19■□□□□ 0.02
LIMS1-204ENST00000409441 CLIC4Q9Y696 253 aa15.19■□□□□ 0.02
LIMS1-204ENST00000409441 FRMPD4Q14CM0 1322 aa15.18■□□□□ 0.02
LIMS1-204ENST00000409441 LOC102724159A0A0B4J2E5 919 aa15.18■□□□□ 0.02
LIMS1-204ENST00000409441 EDIL3O43854 480 aa15.18■□□□□ 0.02
LIMS1-204ENST00000409441 ADCY5O95622 1261 aa15.18■□□□□ 0.02
LIMS1-204ENST00000409441 PDE4DQ08499 809 aa15.18■□□□□ 0.02
LIMS1-204ENST00000409441 PWP2Q15269 919 aaKnown RBP15.18■□□□□ 0.02
LIMS1-204ENST00000409441 PCNX4Q63HM2 1172 aa15.18■□□□□ 0.02
LIMS1-204ENST00000409441 MSL3Q8N5Y2 521 aaKnown RBP15.18■□□□□ 0.02
LIMS1-204ENST00000409441 RAET1EQ8TD07 263 aa15.18■□□□□ 0.02
LIMS1-204ENST00000409441 CRYGNQ8WXF5 182 aa15.18■□□□□ 0.02
LIMS1-204ENST00000409441 ZFP91Q96JP5 570 aaPredicted RBP15.18■□□□□ 0.02
LIMS1-204ENST00000409441 ZNFX1Q9P2E3 1918 aaKnown RBP15.18■□□□□ 0.02
LIMS1-204ENST00000409441 ZSWIM8A7E2V4 1837 aa15.18■□□□□ 0.02
LIMS1-204ENST00000409441 PLXNB2O15031 1838 aa15.18■□□□□ 0.02
LIMS1-204ENST00000409441 PPP6R2O75170 966 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 EIF3JO75822 258 aaKnown RBP15.17■□□□□ 0.02
LIMS1-204ENST00000409441 PTMAP06454 111 aaKnown RBP15.17■□□□□ 0.02
LIMS1-204ENST00000409441 CYP3A4P08684 503 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 ATP2B1P20020 1258 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 EDNRBP24530 442 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 CCND2P30279 289 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 ZNF76P36508 570 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 MRPS9P82933 396 aaKnown RBP15.17■□□□□ 0.02
LIMS1-204ENST00000409441 SLC39A14Q15043 492 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 STXBP2Q15833 593 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 ANO6Q4KMQ2 910 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 OLFML2BQ68BL8 750 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 XRRA1Q6P2D8 792 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 ARMCX2Q7L311 632 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 FMR1NBQ8N0W7 255 aaPredicted RBP15.17■□□□□ 0.02
LIMS1-204ENST00000409441 MORC4Q8TE76 937 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 MGAMO43451 1857 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 ADCY3O60266 1144 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 ZNF500O60304 480 aaPredicted RBP15.17■□□□□ 0.02
LIMS1-204ENST00000409441 SNAI1O95863 264 aaPredicted RBP15.17■□□□□ 0.02
LIMS1-204ENST00000409441 STX1AQ16623 288 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 LETM2Q2VYF4 491 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 NEK8Q86SG6 692 aa15.17■□□□□ 0.02
LIMS1-204ENST00000409441 TRMT44Q8IYL2 757 aaKnown RBP15.17■□□□□ 0.02
LIMS1-204ENST00000409441 SYNGAP1Q96PV0 1343 aa15.16■□□□□ 0.02
LIMS1-204ENST00000409441 IGHA2P01877 340 aa15.16■□□□□ 0.02
LIMS1-204ENST00000409441 TPM3P06753 285 aa15.16■□□□□ 0.02
LIMS1-204ENST00000409441 ELNP15502 786 aa15.16■□□□□ 0.02
LIMS1-204ENST00000409441 CMA1P23946 247 aa15.16■□□□□ 0.02
LIMS1-204ENST00000409441 CYP2C19P33261 490 aa15.16■□□□□ 0.02
LIMS1-204ENST00000409441 TOB1P50616 345 aaPredicted RBP15.16■□□□□ 0.02
LIMS1-204ENST00000409441 EEPD1Q7L9B9 569 aa15.16■□□□□ 0.02
LIMS1-204ENST00000409441 CTU1Q7Z7A3 348 aaKnown RBP15.16■□□□□ 0.02
LIMS1-204ENST00000409441 CYP2W1Q8TAV3 490 aa15.16■□□□□ 0.02
LIMS1-204ENST00000409441 PXYLP1Q8TE99 480 aa15.16■□□□□ 0.02
LIMS1-204ENST00000409441 TRIB2Q92519 343 aa15.16■□□□□ 0.02
LIMS1-204ENST00000409441 CBX8Q9HC52 389 aa15.16■□□□□ 0.02
LIMS1-204ENST00000409441 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.16■□□□□ 0.02
LIMS1-204ENST00000409441 PTPN22Q9Y2R2 807 aa15.16■□□□□ 0.02
LIMS1-204ENST00000409441 ZNF236Q9UL36 1845 aa15.15■□□□□ 0.02
LIMS1-204ENST00000409441 FAM86B1E9PN63 330 aa15.15■□□□□ 0.02
LIMS1-204ENST00000409441 STAM2O75886 525 aa15.15■□□□□ 0.02
LIMS1-204ENST00000409441 FAM86B2P0C5J1 330 aa15.15■□□□□ 0.02
LIMS1-204ENST00000409441 CIITAP33076 1130 aa15.15■□□□□ 0.02
LIMS1-204ENST00000409441 TRAPPC10P48553 1259 aa15.15■□□□□ 0.02
LIMS1-204ENST00000409441 CEP55Q53EZ4 464 aa15.15■□□□□ 0.02
LIMS1-204ENST00000409441 RILPL1Q5EBL4 403 aa15.15■□□□□ 0.02
LIMS1-204ENST00000409441 MFSD14CQ5VZR4 134 aa15.15■□□□□ 0.02
LIMS1-204ENST00000409441 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.15■□□□□ 0.02
LIMS1-204ENST00000409441 UBIAD1Q9Y5Z9 338 aa15.15■□□□□ 0.02
LIMS1-204ENST00000409441 PTCH2Q9Y6C5 1203 aa15.15■□□□□ 0.02
LIMS1-204ENST00000409441 CASP8AP2Q9UKL3 1982 aa15.15■□□□□ 0.02
LIMS1-204ENST00000409441 CYP3A7-CYP3A51PA0A087WV96 503 aa15.14■□□□□ 0.01
LIMS1-204ENST00000409441 MEIS1O00470 390 aa15.14■□□□□ 0.01
LIMS1-204ENST00000409441 CCNT1O60563 726 aaKnown RBP15.14■□□□□ 0.01
LIMS1-204ENST00000409441 ITGB5P18084 799 aa15.14■□□□□ 0.01
LIMS1-204ENST00000409441 CYP3A7P24462 503 aa15.14■□□□□ 0.01
LIMS1-204ENST00000409441 PRAMEF19Q5SWL8 479 aa15.14■□□□□ 0.01
LIMS1-204ENST00000409441 AXDND1Q5T1B0 1012 aaPredicted RBP15.14■□□□□ 0.01
LIMS1-204ENST00000409441 PPP4R3AQ6IN85 833 aa15.14■□□□□ 0.01
LIMS1-204ENST00000409441 MXRA8Q9BRK3 442 aa15.14■□□□□ 0.01
LIMS1-204ENST00000409441 ABHD16BQ9H3Z7 469 aa15.14■□□□□ 0.01
LIMS1-204ENST00000409441 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.14■□□□□ 0.01
LIMS1-204ENST00000409441 ANO10Q9NW15 660 aa15.14■□□□□ 0.01
LIMS1-204ENST00000409441 RBBP6Q7Z6E9 1792 aaKnown RBP15.14■□□□□ 0.01
LIMS1-204ENST00000409441 FAM237AA0A1B0GTK4 181 aa15.14■□□□□ 0.01
LIMS1-204ENST00000409441 WNT7AO00755 349 aa15.14■□□□□ 0.01
LIMS1-204ENST00000409441 RGS20O76081 388 aa15.14■□□□□ 0.01
LIMS1-204ENST00000409441 TDP2O95551 362 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms