RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 GOLGA8KD6RF30 607 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 RBAK-RBAKDNI3L0D1 243 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 RGL2O15211 777 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 GLI1P08151 1106 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 NAP1L1P55209 391 aaKnown RBP14.04□□□□□ -0.16
SHMT1-205ENST00000395684 TMEM266Q2M3C6 531 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 ZCWPW2Q504Y3 356 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 TDRD12Q587J7 1177 aaKnown RBP14.04□□□□□ -0.16
SHMT1-205ENST00000395684 TTC19Q6DKK2 380 aaPredicted RBP14.04□□□□□ -0.16
SHMT1-205ENST00000395684 CAVIN3Q969G5 261 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 DNAJC19Q96DA6 116 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 EDEM3Q9BZQ6 932 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 RIC8AQ9NPQ8 531 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 ZPR1O75312 459 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 PDHBP11177 359 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 TNFRSF8P28908 595 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 CCT5P48643 541 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 NOVP48745 357 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 PSMD2Q13200 908 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 TMEM119Q4V9L6 283 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 FAM83BQ5T0W9 1011 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 KRT79Q5XKE5 535 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 TEX11Q8IYF3 940 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 FGFBP2Q9BYJ0 223 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 KANSL2Q9H9L4 492 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 LEMD3Q9Y2U8 911 aa14.04□□□□□ -0.16
SHMT1-205ENST00000395684 GPR75-ASB3A0A0A6YYF3 556 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 ZSCAN5CA6NGD5 496 aaPredicted RBP14.03□□□□□ -0.16
SHMT1-205ENST00000395684 EPB41P11171 864 aaKnown RBP14.03□□□□□ -0.16
SHMT1-205ENST00000395684 CFAP221Q4G0U5 840 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 ALS2CLQ60I27 953 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 MYOCDQ8IZQ8 938 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 COL4A3BPQ9Y5P4 624 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 DDX60LQ5H9U9 1706 aaKnown RBP14.03□□□□□ -0.16
SHMT1-205ENST00000395684 NAV1Q8NEY1 1877 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 TRAF5O00463 557 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 EIF3HO15372 352 aaKnown RBP eCLIP14.03□□□□□ -0.16
SHMT1-205ENST00000395684 OPA1O60313 960 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 RPS6KA4O75676 772 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 PALMO75781 387 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 CARSP49589 748 aaKnown RBP14.03□□□□□ -0.16
SHMT1-205ENST00000395684 DNA2P51530 1060 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 ADCY7P51828 1080 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 GNGT1P63211 74 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 FKBP3Q00688 224 aaKnown RBP14.03□□□□□ -0.16
SHMT1-205ENST00000395684 COASYQ13057 564 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 SLC9C1Q4G0N8 1177 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 BCAS4Q8TDM0 211 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 ZIM3Q96PE6 472 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 TSG101Q99816 390 aa14.03□□□□□ -0.16
SHMT1-205ENST00000395684 ESYT3A0FGR9 886 aa14.02□□□□□ -0.16
SHMT1-205ENST00000395684 FAM153BP0C7A2 387 aa14.02□□□□□ -0.16
SHMT1-205ENST00000395684 RHBDL3P58872 404 aa14.02□□□□□ -0.16
SHMT1-205ENST00000395684 FAM153CQ494X1 144 aa14.02□□□□□ -0.16
SHMT1-205ENST00000395684 GLE1Q53GS7 698 aaKnown RBP14.02□□□□□ -0.16
SHMT1-205ENST00000395684 SFMBT2Q5VUG0 894 aa14.02□□□□□ -0.16
SHMT1-205ENST00000395684 PROM2Q8N271 834 aa14.02□□□□□ -0.16
SHMT1-205ENST00000395684 PPM1EQ8WY54 764 aa14.02□□□□□ -0.16
SHMT1-205ENST00000395684 HAS1Q92839 578 aa14.02□□□□□ -0.16
SHMT1-205ENST00000395684 RAB34Q9BZG1 259 aa14.02□□□□□ -0.16
SHMT1-205ENST00000395684 GDF3Q9NR23 364 aa14.02□□□□□ -0.16
SHMT1-205ENST00000395684 TBC1D7Q9P0N9 293 aa14.02□□□□□ -0.16
SHMT1-205ENST00000395684 CEP72Q9P209 647 aa14.02□□□□□ -0.16
SHMT1-205ENST00000395684 FAM153AQ9UHL3 310 aa14.02□□□□□ -0.16
SHMT1-205ENST00000395684 GNPATO15228 680 aa14.02□□□□□ -0.17
SHMT1-205ENST00000395684 FTCDO95954 541 aa14.02□□□□□ -0.17
SHMT1-205ENST00000395684 KRT14P02533 472 aa14.02□□□□□ -0.17
SHMT1-205ENST00000395684 SERPING1P05155 500 aa14.02□□□□□ -0.17
SHMT1-205ENST00000395684 KLRC1P26715 233 aa14.02□□□□□ -0.17
SHMT1-205ENST00000395684 TNNI2P48788 182 aa14.02□□□□□ -0.17
SHMT1-205ENST00000395684 POLR2FP61218 127 aaKnown RBP14.02□□□□□ -0.17
SHMT1-205ENST00000395684 CCDC40Q4G0X9 1142 aa14.02□□□□□ -0.17
SHMT1-205ENST00000395684 FOXR2Q6PJQ5 311 aa14.02□□□□□ -0.17
SHMT1-205ENST00000395684 GBP6Q6ZN66 633 aa14.02□□□□□ -0.17
SHMT1-205ENST00000395684 ZNF804AQ7Z570 1209 aa14.02□□□□□ -0.17
SHMT1-205ENST00000395684 EFCAB13Q8IY85 973 aa14.02□□□□□ -0.17
SHMT1-205ENST00000395684 NFU1Q9UMS0 254 aa14.02□□□□□ -0.17
SHMT1-205ENST00000395684 HSF2BPO75031 334 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 GRAPQ13588 217 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 NAB2Q15742 525 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 UBE2SQ16763 222 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 TTC31Q49AM3 519 aaPredicted RBP14.01□□□□□ -0.17
SHMT1-205ENST00000395684 BARGINQ6ZT62 677 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 LRRC47Q8N1G4 583 aaKnown RBP14.01□□□□□ -0.17
SHMT1-205ENST00000395684 GRAPLQ8TC17 118 aaPredicted RBP14.01□□□□□ -0.17
SHMT1-205ENST00000395684 TBC1D5Q92609 795 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 SYN2Q92777 582 aaPredicted RBP14.01□□□□□ -0.17
SHMT1-205ENST00000395684 LSM14BQ9BX40 385 aaKnown RBP14.01□□□□□ -0.17
SHMT1-205ENST00000395684 EFCC1Q9HA90 598 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 EPB41L5Q9HCM4 733 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 TSKSQ9UJT2 592 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 PACSIN2Q9UNF0 486 aaPredicted RBP14.01□□□□□ -0.17
SHMT1-205ENST00000395684 A0A087X0T9 212 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 UBAP1LF5GYI3 381 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 hCG_1984214I3L0E3 225 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 FAM228BP0C875 321 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 GUCY2DQ02846 1103 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 TRADDQ15628 312 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 KCTD16Q68DU8 428 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 ARHGAP27Q6ZUM4 889 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms