RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 AIFM3Q96NN9 605 aa24.83■■□□□ 1.57
CLN3-207ENST00000395653 SH2B1Q9NRF2 756 aaPredicted RBP24.83■■□□□ 1.57
CLN3-207ENST00000395653 POLR3EQ9NVU0 708 aa24.83■■□□□ 1.57
CLN3-207ENST00000395653 ORC3Q9UBD5 711 aaPredicted RBP24.83■■□□□ 1.57
CLN3-207ENST00000395653 UBIAD1Q9Y5Z9 338 aa24.83■■□□□ 1.57
CLN3-207ENST00000395653 ADAMTS3O15072 1205 aa24.82■■□□□ 1.56
CLN3-207ENST00000395653 UBA1P22314 1058 aaKnown RBP24.82■■□□□ 1.56
CLN3-207ENST00000395653 LAMC2Q13753 1193 aa24.82■■□□□ 1.56
CLN3-207ENST00000395653 GALNT17Q6IS24 598 aa24.82■■□□□ 1.56
CLN3-207ENST00000395653 CXCL17Q6UXB2 119 aa24.82■■□□□ 1.56
CLN3-207ENST00000395653 PCDHA4Q9UN74 947 aa24.82■■□□□ 1.56
CLN3-207ENST00000395653 XBP1P17861 261 aa24.81■■□□□ 1.56
CLN3-207ENST00000395653 ITGB5P18084 799 aa24.81■■□□□ 1.56
CLN3-207ENST00000395653 SP2Q02086 613 aa24.81■■□□□ 1.56
CLN3-207ENST00000395653 SEMA3FQ13275 785 aa24.81■■□□□ 1.56
CLN3-207ENST00000395653 DHX37Q8IY37 1157 aaKnown RBP24.81■■□□□ 1.56
CLN3-207ENST00000395653 DAGLBQ8NCG7 672 aa24.81■■□□□ 1.56
CLN3-207ENST00000395653 CDHR1Q96JP9 859 aa24.81■■□□□ 1.56
CLN3-207ENST00000395653 KPNA6O60684 536 aa24.8■■□□□ 1.56
CLN3-207ENST00000395653 GGPS1O95749 300 aa24.8■■□□□ 1.56
CLN3-207ENST00000395653 FDPSP14324 419 aaKnown RBP24.8■■□□□ 1.56
CLN3-207ENST00000395653 RTP1P59025 263 aa24.8■■□□□ 1.56
CLN3-207ENST00000395653 CELF3Q5SZQ8 465 aaKnown RBP24.8■■□□□ 1.56
CLN3-207ENST00000395653 MYSM1Q5VVJ2 828 aa24.8■■□□□ 1.56
CLN3-207ENST00000395653 C7orf61Q8IZ16 206 aa24.8■■□□□ 1.56
CLN3-207ENST00000395653 AFG1LQ8WV93 481 aa24.8■■□□□ 1.56
CLN3-207ENST00000395653 CRYGNQ8WXF5 182 aa24.8■■□□□ 1.56
CLN3-207ENST00000395653 SENP7Q9BQF6 1050 aa24.8■■□□□ 1.56
CLN3-207ENST00000395653 DNAH12Q6ZR08 3092 aa24.8■■□□□ 1.56
CLN3-207ENST00000395653 MAFGO15525 162 aa24.79■■□□□ 1.56
CLN3-207ENST00000395653 MMP3P08254 477 aa24.79■■□□□ 1.56
CLN3-207ENST00000395653 ARHGAP4P98171 946 aa24.79■■□□□ 1.56
CLN3-207ENST00000395653 PURAQ00577 322 aaKnown RBP24.79■■□□□ 1.56
CLN3-207ENST00000395653 NEDD9Q14511 834 aa24.79■■□□□ 1.56
CLN3-207ENST00000395653 CCDC83Q8IWF9 413 aa24.79■■□□□ 1.56
CLN3-207ENST00000395653 RASGRP4Q8TDF6 673 aa24.79■■□□□ 1.56
CLN3-207ENST00000395653 JADE2Q9NQC1 790 aa24.79■■□□□ 1.56
CLN3-207ENST00000395653 A0A0U1RQG5 324 aaPredicted RBP24.78■■□□□ 1.56
CLN3-207ENST00000395653 DTNBO60941 627 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 CYP3A4P08684 503 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 MTMR1Q13613 665 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 NPY5RQ15761 445 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 TRIM60Q495X7 471 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 PRPF38BQ5VTL8 546 aaKnown RBP24.78■■□□□ 1.56
CLN3-207ENST00000395653 BLIDQ8IZY5 108 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 PPTC7Q8NI37 304 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 VTI1AQ96AJ9 217 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 MXRA8Q9BRK3 442 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 LLPHQ9BRT6 129 aaKnown RBP24.78■■□□□ 1.56
CLN3-207ENST00000395653 ALG1Q9BT22 464 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 PHF20Q9BVI0 1012 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 ATP11BQ9Y2G3 1177 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 JAK2O60674 1132 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 MYL3P08590 195 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 CEP55Q53EZ4 464 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 MTG1Q9BT17 334 aaPredicted RBP24.78■■□□□ 1.56
CLN3-207ENST00000395653 SEZ6LQ9BYH1 1024 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 MLXIPQ9HAP2 919 aa24.78■■□□□ 1.56
CLN3-207ENST00000395653 M0R2N6 131 aa24.77■■□□□ 1.56
CLN3-207ENST00000395653 HOXD8P13378 290 aaPredicted RBP24.77■■□□□ 1.56
CLN3-207ENST00000395653 MCM2P49736 904 aa24.77■■□□□ 1.56
CLN3-207ENST00000395653 METTL7BQ6UX53 244 aa24.77■■□□□ 1.56
CLN3-207ENST00000395653 GIMAP8Q8ND71 665 aaPredicted RBP24.77■■□□□ 1.56
CLN3-207ENST00000395653 SPATA33Q96N06 139 aa24.77■■□□□ 1.56
CLN3-207ENST00000395653 TOX2Q96NM4 488 aa24.77■■□□□ 1.56
CLN3-207ENST00000395653 KCNJ14Q9UNX9 436 aa24.77■■□□□ 1.56
CLN3-207ENST00000395653 MROH7Q68CQ1 1323 aa24.76■■□□□ 1.55
CLN3-207ENST00000395653 H0YGN5 161 aa24.76■■□□□ 1.55
CLN3-207ENST00000395653 ARVCFO00192 962 aa24.76■■□□□ 1.55
CLN3-207ENST00000395653 CDK7P50613 346 aa24.76■■□□□ 1.55
CLN3-207ENST00000395653 DGKDQ16760 1214 aa24.76■■□□□ 1.55
CLN3-207ENST00000395653 HSDL1Q3SXM5 330 aa24.76■■□□□ 1.55
CLN3-207ENST00000395653 NIPA1Q7RTP0 329 aa24.76■■□□□ 1.55
CLN3-207ENST00000395653 ANKRD33Q7Z3H0 272 aa24.76■■□□□ 1.55
CLN3-207ENST00000395653 SLC43A3Q8NBI5 491 aa24.76■■□□□ 1.55
CLN3-207ENST00000395653 MEIS1O00470 390 aa24.75■■□□□ 1.55
CLN3-207ENST00000395653 KCNA2P16389 499 aa24.75■■□□□ 1.55
CLN3-207ENST00000395653 ZNF76P36508 570 aa24.75■■□□□ 1.55
CLN3-207ENST00000395653 TLE2Q04725 743 aa24.75■■□□□ 1.55
CLN3-207ENST00000395653 ITGA7Q13683 1181 aa24.75■■□□□ 1.55
CLN3-207ENST00000395653 CYFIP1Q7L576 1253 aa24.75■■□□□ 1.55
CLN3-207ENST00000395653 CYP2W1Q8TAV3 490 aa24.75■■□□□ 1.55
CLN3-207ENST00000395653 KCNH7Q9NS40 1196 aa24.75■■□□□ 1.55
CLN3-207ENST00000395653 GJB4Q9NTQ9 266 aa24.75■■□□□ 1.55
CLN3-207ENST00000395653 SORBS3O60504 671 aa24.74■■□□□ 1.55
CLN3-207ENST00000395653 ATP9AO75110 1047 aa24.74■■□□□ 1.55
CLN3-207ENST00000395653 PPFIA4O75335 1185 aa24.74■■□□□ 1.55
CLN3-207ENST00000395653 CD2BP2O95400 341 aaKnown RBP24.74■■□□□ 1.55
CLN3-207ENST00000395653 HMGN5P82970 282 aaKnown RBP24.74■■□□□ 1.55
CLN3-207ENST00000395653 BCAS3Q9H6U6 928 aa24.74■■□□□ 1.55
CLN3-207ENST00000395653 CEP290O15078 2479 aa24.74■■□□□ 1.55
CLN3-207ENST00000395653 GRIN2DO15399 1336 aa24.74■■□□□ 1.55
CLN3-207ENST00000395653 FAM86B1E9PN63 330 aa24.73■■□□□ 1.55
CLN3-207ENST00000395653 PQBP1O60828 265 aaKnown RBP24.73■■□□□ 1.55
CLN3-207ENST00000395653 FAM86B2P0C5J1 330 aa24.73■■□□□ 1.55
CLN3-207ENST00000395653 CIITAP33076 1130 aa24.73■■□□□ 1.55
CLN3-207ENST00000395653 PSMC6P62333 389 aa24.73■■□□□ 1.55
CLN3-207ENST00000395653 MYH7BA7E2Y1 1941 aa24.73■■□□□ 1.55
CLN3-207ENST00000395653 SCN10AQ9Y5Y9 1956 aa24.72■■□□□ 1.55
CLN3-207ENST00000395653 IGLV3-22A0A075B6J6 115 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms