RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 RSRC2Q7L4I2 434 aaKnown RBP10.7□□□□□ -0.7
COL6A3-204ENST00000392003 CTAGE6Q86UF2 777 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 CTAGE4Q8IX94 777 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 RAD54LQ92698 747 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 DNAJC7Q99615 494 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 MYH8P13535 1937 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 POTEMA6NI47 508 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 MYMKA6NI61 221 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 ERLIN1O75477 346 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 PNMA6AP0CW24 399 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-204ENST00000392003 SLC1A4P43007 532 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 PSMD2Q13200 908 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 CERKLQ49MI3 558 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-204ENST00000392003 COBLL1Q53SF7 1204 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 CCDC122Q5T0U0 273 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 C1QTNF12Q5T7M4 302 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 DHX36Q9H2U1 1008 aaKnown RBP10.7□□□□□ -0.7
COL6A3-204ENST00000392003 TDRD3Q9H7E2 651 aaKnown RBP10.7□□□□□ -0.7
COL6A3-204ENST00000392003 HDAC9Q9UKV0 1011 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 PCDHA12Q9UN75 941 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 USP17L10C9JJH3 530 aa10.69□□□□□ -0.7
COL6A3-204ENST00000392003 SCP2P22307 547 aa10.69□□□□□ -0.7
COL6A3-204ENST00000392003 SPA17Q15506 151 aa10.69□□□□□ -0.7
COL6A3-204ENST00000392003 APOBEC3HQ6NTF7 200 aaKnown RBP10.69□□□□□ -0.7
COL6A3-204ENST00000392003 GUF1Q8N442 669 aaKnown RBP10.69□□□□□ -0.7
COL6A3-204ENST00000392003 LRRC15Q8TF66 581 aa10.69□□□□□ -0.7
COL6A3-204ENST00000392003 PARD6BQ9BYG5 372 aa10.69□□□□□ -0.7
COL6A3-204ENST00000392003 NT5C3AQ9H0P0 336 aa10.69□□□□□ -0.7
COL6A3-204ENST00000392003 KDM3AQ9Y4C1 1321 aa10.69□□□□□ -0.7
COL6A3-204ENST00000392003 A0A0U1RQJ8 604 aa10.69□□□□□ -0.7
COL6A3-204ENST00000392003 CCDC170Q8IYT3 715 aa10.69□□□□□ -0.7
COL6A3-204ENST00000392003 ATRIPQ8WXE1 791 aa10.69□□□□□ -0.7
COL6A3-204ENST00000392003 PNMA5Q96PV4 448 aa10.69□□□□□ -0.7
COL6A3-204ENST00000392003 VEZTQ9HBM0 779 aa10.69□□□□□ -0.7
COL6A3-204ENST00000392003 PICK1Q9NRD5 415 aa10.69□□□□□ -0.7
COL6A3-204ENST00000392003 BLOC1S4Q9NUP1 217 aa10.69□□□□□ -0.7
COL6A3-204ENST00000392003 PI4KBQ9UBF8 816 aa10.69□□□□□ -0.7
COL6A3-204ENST00000392003 PPP1R12AO14974 1030 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-204ENST00000392003 SEPT2Q15019 361 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 BRD3Q15059 726 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 ZKSCAN8Q15776 578 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-204ENST00000392003 SLFN13Q68D06 897 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 CENPPQ6IPU0 288 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 HPS3Q969F9 1004 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 ITFG2Q969R8 447 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 JAKMIP2Q96AA8 810 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 EHD4Q9H223 541 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 KANSL2Q9H9L4 492 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 KRT18P05783 430 aaKnown RBP10.68□□□□□ -0.7
COL6A3-204ENST00000392003 LRRC63Q05C16 580 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 MAN2A1Q16706 1144 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 CCDC84Q86UT8 332 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-204ENST00000392003 KIAA0895Q8NCT3 520 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 DCAF4Q8WV16 495 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 DDX12PQ92771 950 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 ZDHHC15Q96MV8 337 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 TANGO6Q9C0B7 1094 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 EPC1Q9H2F5 836 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 MYO6Q9UM54 1294 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 PCDHA1Q9Y5I3 950 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 USO1O60763 962 aaKnown RBP10.68□□□□□ -0.7
COL6A3-204ENST00000392003 DLGAP5Q15398 846 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 DACT2Q5SW24 774 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 CCDC65Q8IXS2 484 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 CCDC42Q96M95 316 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 ERGIC2Q96RQ1 377 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 CAMKK2Q96RR4 588 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 GBP3Q9H0R5 595 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 DEF6Q9H4E7 631 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 MMRN2Q9H8L6 949 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 SLC24A3Q9HC58 644 aa10.68□□□□□ -0.7
COL6A3-204ENST00000392003 CCDC151A5D8V7 595 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 TCP10L2B9ZVM9 353 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 KIF1CO43896 1103 aaKnown RBP10.67□□□□□ -0.7
COL6A3-204ENST00000392003 SEC31AO94979 1220 aaKnown RBP10.67□□□□□ -0.7
COL6A3-204ENST00000392003 TUBBP07437 444 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 ARHGAP25P42331 645 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 GPS2Q13227 327 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 VWA3BQ502W6 1294 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 FIGNQ5HY92 759 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 MCTP2Q6DN12 878 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 CC2D1AQ6P1N0 951 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-204ENST00000392003 RTKN2Q8IZC4 609 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 MYOCDQ8IZQ8 938 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 NDST4Q9H3R1 872 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 SEMA6BQ9H3T3 888 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 ZNF277Q9NRM2 450 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-204ENST00000392003 PCDHAC2Q9Y5I4 1007 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 FHOD1Q9Y613 1164 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 CLRN2A0PK11 232 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 KIF5AQ12840 1032 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 CCDC40Q4G0X9 1142 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 ZFPM1Q8IX07 1006 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 NHEJ1Q9H9Q4 299 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-204ENST00000392003 AGPAT5Q9NUQ2 364 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 IRAK4Q9NWZ3 460 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 NYAP2Q9P242 653 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 A0A1W2PQJ5 194 aa10.67□□□□□ -0.7
COL6A3-204ENST00000392003 ZRANB2O95218 330 aaKnown RBP eCLIP10.67□□□□□ -0.7
COL6A3-204ENST00000392003 GDF11O95390 407 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms