RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 R3HCC1Q9Y3T6 440 aaKnown RBP28.13■■■□□ 2.09
SHOX2-201ENST00000389589 MED24O75448 989 aa28.12■■■□□ 2.09
SHOX2-201ENST00000389589 FLOT1O75955 427 aa28.12■■■□□ 2.09
SHOX2-201ENST00000389589 PBX1P40424 430 aa28.12■■■□□ 2.09
SHOX2-201ENST00000389589 PMS1P54277 932 aaKnown RBP28.12■■■□□ 2.09
SHOX2-201ENST00000389589 SPP2Q13103 211 aa28.12■■■□□ 2.09
SHOX2-201ENST00000389589 KIAA0895Q8NCT3 520 aa28.12■■■□□ 2.09
SHOX2-201ENST00000389589 ZNF280CQ8ND82 737 aa28.12■■■□□ 2.09
SHOX2-201ENST00000389589 CYP2W1Q8TAV3 490 aa28.12■■■□□ 2.09
SHOX2-201ENST00000389589 TMX1Q9H3N1 280 aa28.12■■■□□ 2.09
SHOX2-201ENST00000389589 MAP3K20Q9NYL2 800 aaKnown RBP28.12■■■□□ 2.09
SHOX2-201ENST00000389589 TEX33O43247 280 aa28.12■■■□□ 2.09
SHOX2-201ENST00000389589 PLA2G4BP0C869 781 aa28.12■■■□□ 2.09
SHOX2-201ENST00000389589 PTPRAP18433 802 aa28.12■■■□□ 2.09
SHOX2-201ENST00000389589 COPB1P53618 953 aaKnown RBP28.12■■■□□ 2.09
SHOX2-201ENST00000389589 N4BP3O15049 544 aa28.11■■■□□ 2.09
SHOX2-201ENST00000389589 IDEP14735 1019 aa28.11■■■□□ 2.09
SHOX2-201ENST00000389589 EPS15P42566 896 aa28.11■■■□□ 2.09
SHOX2-201ENST00000389589 EHHADHQ08426 723 aa28.11■■■□□ 2.09
SHOX2-201ENST00000389589 DNAJC19Q96DA6 116 aa28.11■■■□□ 2.09
SHOX2-201ENST00000389589 RPAP3Q9H6T3 665 aaPredicted RBP28.11■■■□□ 2.09
SHOX2-201ENST00000389589 CTDP1Q9Y5B0 961 aaPredicted RBP28.11■■■□□ 2.09
SHOX2-201ENST00000389589 ITIH6Q6UXX5 1313 aa28.11■■■□□ 2.09
SHOX2-201ENST00000389589 PITPNM2Q9BZ72 1349 aa28.11■■■□□ 2.09
SHOX2-201ENST00000389589 E9PMD0 336 aa28.11■■■□□ 2.09
SHOX2-201ENST00000389589 SETQ01105 290 aaPredicted RBP28.11■■■□□ 2.09
SHOX2-201ENST00000389589 SUPT20HL1Q3ZLR7 823 aa28.11■■■□□ 2.09
SHOX2-201ENST00000389589 CEP55Q53EZ4 464 aa28.11■■■□□ 2.09
SHOX2-201ENST00000389589 CATSPER3Q86XQ3 398 aa28.11■■■□□ 2.09
SHOX2-201ENST00000389589 GUF1Q8N442 669 aaKnown RBP28.11■■■□□ 2.09
SHOX2-201ENST00000389589 ZKSCAN4Q969J2 545 aaPredicted RBP28.11■■■□□ 2.09
SHOX2-201ENST00000389589 POLR3CQ9BUI4 534 aaPredicted RBP28.11■■■□□ 2.09
SHOX2-201ENST00000389589 SRRTQ9BXP5 876 aaKnown RBP28.11■■■□□ 2.09
SHOX2-201ENST00000389589 SLC39A2Q9NP94 309 aa28.11■■■□□ 2.09
SHOX2-201ENST00000389589 MAGEC2Q9UBF1 373 aaPredicted RBP28.11■■■□□ 2.09
SHOX2-201ENST00000389589 ZBED4O75132 1171 aa28.1■■■□□ 2.09
SHOX2-201ENST00000389589 PTPN21Q16825 1174 aa28.1■■■□□ 2.09
SHOX2-201ENST00000389589 IRF2BP1Q8IU81 584 aa28.1■■■□□ 2.09
SHOX2-201ENST00000389589 FAM114A1Q8IWE2 563 aa28.1■■■□□ 2.09
SHOX2-201ENST00000389589 CSGALNACT2Q8N6G5 542 aa28.1■■■□□ 2.09
SHOX2-201ENST00000389589 CLEC4DQ8WXI8 215 aa28.1■■■□□ 2.09
SHOX2-201ENST00000389589 DUSP9Q99956 384 aaKnown RBP28.1■■■□□ 2.09
SHOX2-201ENST00000389589 FHDC1Q9C0D6 1143 aaPredicted RBP28.1■■■□□ 2.09
SHOX2-201ENST00000389589 SSBP05455 408 aaKnown RBP eCLIP28.09■■■□□ 2.09
SHOX2-201ENST00000389589 HIRAP54198 1017 aaPredicted RBP28.09■■■□□ 2.09
SHOX2-201ENST00000389589 SLC5A5Q92911 643 aa28.09■■■□□ 2.09
SHOX2-201ENST00000389589 DNM3Q9UQ16 869 aa28.09■■■□□ 2.09
SHOX2-201ENST00000389589 C19orf81C9J6K1 198 aa28.09■■■□□ 2.09
SHOX2-201ENST00000389589 PRAMEF18Q5VWM3 479 aa28.09■■■□□ 2.09
SHOX2-201ENST00000389589 CENPPQ6IPU0 288 aa28.09■■■□□ 2.09
SHOX2-201ENST00000389589 CCDC65Q8IXS2 484 aa28.09■■■□□ 2.09
SHOX2-201ENST00000389589 CCAR2Q8N163 923 aaKnown RBP28.09■■■□□ 2.09
SHOX2-201ENST00000389589 KLRG1Q96E93 195 aa28.09■■■□□ 2.09
SHOX2-201ENST00000389589 C12orf42Q96LP6 360 aa28.09■■■□□ 2.09
SHOX2-201ENST00000389589 SPATA31C1P0DKV0 1188 aa28.08■■■□□ 2.09
SHOX2-201ENST00000389589 DGKZQ13574 1117 aa28.08■■■□□ 2.09
SHOX2-201ENST00000389589 ANKRD40Q6AI12 368 aa28.08■■■□□ 2.09
SHOX2-201ENST00000389589 PPFIBP1Q86W92 1011 aa28.08■■■□□ 2.09
SHOX2-201ENST00000389589 GPBP1Q86WP2 473 aa28.08■■■□□ 2.09
SHOX2-201ENST00000389589 CPXCR1Q8N123 301 aa28.08■■■□□ 2.09
SHOX2-201ENST00000389589 POTEFA5A3E0 1075 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 MEIS1O00470 390 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 POTEIP0CG38 1075 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 ALAS1P13196 640 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 NOL9Q5SY16 702 aaKnown RBP28.07■■■□□ 2.08
SHOX2-201ENST00000389589 LRCH2Q5VUJ6 765 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 FOXR2Q6PJQ5 311 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 POTEGQ6S5H5 508 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 POTEEQ6S8J3 1075 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 KRT26Q7Z3Y9 468 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 TC2NQ8N9U0 490 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 VPS16Q9H269 839 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 RAVER2Q9HCJ3 691 aaKnown RBP28.07■■■□□ 2.08
SHOX2-201ENST00000389589 PANK4Q9NVE7 773 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 TAB2Q9NYJ8 693 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 RPTORQ8N122 1335 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 PSMD10O75832 226 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 SLC12A3P55017 1021 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 COASYQ13057 564 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 PPP2R5CQ13362 524 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 HPS3Q969F9 1004 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP28.07■■■□□ 2.08
SHOX2-201ENST00000389589 RLFQ13129 1914 aa28.07■■■□□ 2.08
SHOX2-201ENST00000389589 NFIBO00712 420 aa28.06■■■□□ 2.08
SHOX2-201ENST00000389589 OTOP1Q7RTM1 612 aa28.06■■■□□ 2.08
SHOX2-201ENST00000389589 PRIMPOLQ96LW4 560 aa28.06■■■□□ 2.08
SHOX2-201ENST00000389589 ZHX2Q9Y6X8 837 aa28.06■■■□□ 2.08
SHOX2-201ENST00000389589 AKR1B15C9JRZ8 316 aaPredicted RBP28.06■■■□□ 2.08
SHOX2-201ENST00000389589 CCP110O43303 1012 aa28.06■■■□□ 2.08
SHOX2-201ENST00000389589 CYP11B2P19099 503 aa28.06■■■□□ 2.08
SHOX2-201ENST00000389589 UBXN2AP68543 259 aa28.06■■■□□ 2.08
SHOX2-201ENST00000389589 CREBRFQ8IUR6 639 aa28.06■■■□□ 2.08
SHOX2-201ENST00000389589 EIF2AK1Q9BQI3 630 aaKnown RBP28.06■■■□□ 2.08
SHOX2-201ENST00000389589 WDR11Q9BZH6 1224 aa28.06■■■□□ 2.08
SHOX2-201ENST00000389589 TUFT1Q9NNX1 390 aa28.06■■■□□ 2.08
SHOX2-201ENST00000389589 SSC5DA1L4H1 1573 aa28.05■■■□□ 2.08
SHOX2-201ENST00000389589 COL11A1P12107 1806 aaPredicted RBP28.05■■■□□ 2.08
SHOX2-201ENST00000389589 NIPA1Q7RTP0 329 aa28.05■■■□□ 2.08
SHOX2-201ENST00000389589 SYT2Q8N9I0 419 aaPredicted RBP28.05■■■□□ 2.08
SHOX2-201ENST00000389589 PANX2Q96RD6 677 aa28.05■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms