RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TRADDQ15628 312 aa18.09■□□□□ 0.49
SDC4-201ENST00000372733 KRT12Q99456 494 aa18.09■□□□□ 0.49
SDC4-201ENST00000372733 SNED1Q8TER0 1413 aa18.09■□□□□ 0.49
SDC4-201ENST00000372733 INPP5BP32019 993 aa18.08■□□□□ 0.49
SDC4-201ENST00000372733 KCNQ4P56696 695 aa18.08■□□□□ 0.49
SDC4-201ENST00000372733 GLE1Q53GS7 698 aaKnown RBP18.08■□□□□ 0.49
SDC4-201ENST00000372733 TBC1D9BQ66K14 1250 aa18.08■□□□□ 0.49
SDC4-201ENST00000372733 CASKIN2Q8WXE0 1202 aa18.08■□□□□ 0.49
SDC4-201ENST00000372733 DDX12PQ92771 950 aa18.08■□□□□ 0.49
SDC4-201ENST00000372733 RNPC3Q96LT9 517 aaKnown RBP18.08■□□□□ 0.49
SDC4-201ENST00000372733 MTMR9Q96QG7 549 aa18.08■□□□□ 0.49
SDC4-201ENST00000372733 LSM14BQ9BX40 385 aaKnown RBP18.08■□□□□ 0.49
SDC4-201ENST00000372733 KANSL2Q9H9L4 492 aa18.08■□□□□ 0.49
SDC4-201ENST00000372733 SEC63Q9UGP8 760 aaKnown RBP18.08■□□□□ 0.49
SDC4-201ENST00000372733 ROBO1Q9Y6N7 1651 aa18.08■□□□□ 0.49
SDC4-201ENST00000372733 NOL4O94818 638 aa18.08■□□□□ 0.48
SDC4-201ENST00000372733 LDHBP07195 334 aaKnown RBP18.08■□□□□ 0.48
SDC4-201ENST00000372733 GUCY2CP25092 1073 aa18.08■□□□□ 0.48
SDC4-201ENST00000372733 KLRC1P26715 233 aa18.08■□□□□ 0.48
SDC4-201ENST00000372733 GUCY1A3Q02108 690 aa18.08■□□□□ 0.48
SDC4-201ENST00000372733 ENOX2Q16206 610 aaKnown RBP18.08■□□□□ 0.48
SDC4-201ENST00000372733 CLEC4GQ6UXB4 293 aa18.08■□□□□ 0.48
SDC4-201ENST00000372733 IQCKQ8N0W5 287 aa18.08■□□□□ 0.48
SDC4-201ENST00000372733 RNF10Q8N5U6 811 aaKnown RBP18.08■□□□□ 0.48
SDC4-201ENST00000372733 SNX29Q8TEQ0 813 aa18.08■□□□□ 0.48
SDC4-201ENST00000372733 PIK3R5Q8WYR1 880 aa18.08■□□□□ 0.48
SDC4-201ENST00000372733 RAD54LQ92698 747 aa18.08■□□□□ 0.48
SDC4-201ENST00000372733 UBA5Q9GZZ9 404 aa18.08■□□□□ 0.48
SDC4-201ENST00000372733 TSKSQ9UJT2 592 aa18.08■□□□□ 0.48
SDC4-201ENST00000372733 RBAK-RBAKDNI3L0D1 243 aa18.07■□□□□ 0.48
SDC4-201ENST00000372733 ARID5AQ03989 594 aa18.07■□□□□ 0.48
SDC4-201ENST00000372733 SLC9C1Q4G0N8 1177 aa18.07■□□□□ 0.48
SDC4-201ENST00000372733 CCDC40Q4G0X9 1142 aa18.07■□□□□ 0.48
SDC4-201ENST00000372733 SFMBT2Q5VUG0 894 aa18.07■□□□□ 0.48
SDC4-201ENST00000372733 SPTY2D1Q68D10 685 aaPredicted RBP18.07■□□□□ 0.48
SDC4-201ENST00000372733 TSG101Q99816 390 aa18.07■□□□□ 0.48
SDC4-201ENST00000372733 COL14A1Q05707 1796 aaKnown RBP18.07■□□□□ 0.48
SDC4-201ENST00000372733 POLR2FP61218 127 aaKnown RBP18.07■□□□□ 0.48
SDC4-201ENST00000372733 DDB1Q16531 1140 aa18.07■□□□□ 0.48
SDC4-201ENST00000372733 FAM83BQ5T0W9 1011 aa18.07■□□□□ 0.48
SDC4-201ENST00000372733 PACSIN1Q9BY11 444 aa18.07■□□□□ 0.48
SDC4-201ENST00000372733 CEP72Q9P209 647 aa18.07■□□□□ 0.48
SDC4-201ENST00000372733 SUGP1Q8IWZ8 645 aaKnown RBP18.06■□□□□ 0.48
SDC4-201ENST00000372733 MARCH10Q8NA82 808 aaPredicted RBP18.06■□□□□ 0.48
SDC4-201ENST00000372733 INPP4AQ96PE3 977 aaPredicted RBP18.06■□□□□ 0.48
SDC4-201ENST00000372733 EYA3Q99504 573 aa18.06■□□□□ 0.48
SDC4-201ENST00000372733 FGFBP2Q9BYJ0 223 aa18.06■□□□□ 0.48
SDC4-201ENST00000372733 ANKRD2Q9GZV1 360 aa18.06■□□□□ 0.48
SDC4-201ENST00000372733 NAV1Q8NEY1 1877 aa18.06■□□□□ 0.48
SDC4-201ENST00000372733 WNK3Q9BYP7 1800 aa18.06■□□□□ 0.48
SDC4-201ENST00000372733 SERPING1P05155 500 aa18.06■□□□□ 0.48
SDC4-201ENST00000372733 LSP1P33241 339 aa18.06■□□□□ 0.48
SDC4-201ENST00000372733 FXR2P51116 673 aaKnown RBP eCLIP18.06■□□□□ 0.48
SDC4-201ENST00000372733 EHHADHQ08426 723 aa18.06■□□□□ 0.48
SDC4-201ENST00000372733 TMEM266Q2M3C6 531 aa18.06■□□□□ 0.48
SDC4-201ENST00000372733 KCNV1Q6PIU1 500 aa18.06■□□□□ 0.48
SDC4-201ENST00000372733 KDM7AQ6ZMT4 941 aa18.06■□□□□ 0.48
SDC4-201ENST00000372733 TBC1D5Q92609 795 aa18.06■□□□□ 0.48
SDC4-201ENST00000372733 COL4A3BPQ9Y5P4 624 aa18.06■□□□□ 0.48
SDC4-201ENST00000372733 TRAF5O00463 557 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 EDIL3O43854 480 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 COASYQ13057 564 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 RAPGEF1Q13905 1077 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 NAB2Q15742 525 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 ZCWPW2Q504Y3 356 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 MYOCDQ8IZQ8 938 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 EDEM3Q9BZQ6 932 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 TBC1D7Q9P0N9 293 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 A0A087X0T9 212 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 FAM228BP0C875 321 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 NR1D1P20393 614 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 ECM1Q16610 540 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 LINC00116Q8NCU8 138 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 GJA10Q969M2 543 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 COA7Q96BR5 231 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.05■□□□□ 0.48
SDC4-201ENST00000372733 ATP6V0A2Q9Y487 856 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 FRMPD2Q68DX3 1309 aaPredicted RBP18.05■□□□□ 0.48
SDC4-201ENST00000372733 IRS2Q9Y4H2 1338 aa18.05■□□□□ 0.48
SDC4-201ENST00000372733 KDM4FA0A1W2PPD8 638 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 USP17L5A8MUK1 530 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 RAD51CO43502 376 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 CDK8P49336 464 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 KLHL7Q8IXQ5 586 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 RNF14Q9UBS8 474 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 KCNQ2O43526 872 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 PPARDQ03181 441 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 SF3B2Q13435 895 aaKnown RBP18.04■□□□□ 0.48
SDC4-201ENST00000372733 TMEM119Q4V9L6 283 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 SLC10A5Q5PT55 438 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 MEI1Q5TIA1 1274 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 NAA35Q5VZE5 725 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 NELFCDQ8IXH7 590 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 MREGQ8N565 214 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 CEP95Q96GE4 821 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 NLRP3Q96P20 1036 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 RIC8AQ9NPQ8 531 aa18.04■□□□□ 0.48
SDC4-201ENST00000372733 GRID2IPA4D2P6 1211 aa18.03■□□□□ 0.48
SDC4-201ENST00000372733 HNRNPH1P31943 449 aaKnown RBP18.03■□□□□ 0.48
SDC4-201ENST00000372733 NT5C2P49902 561 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms