RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ITKQ08881 620 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 SEMA3FQ13275 785 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 DGKDQ16760 1214 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 GEN1Q17RS7 908 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 RNF207Q6ZRF8 634 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 GPKOWQ92917 476 aaPredicted RBP eCLIP4.48□□□□□ -1.69
USH2A-202ENST00000366942 SRRTQ9BXP5 876 aaKnown RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 BOLA2Q9H3K6 86 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 DDX56Q9NY93 547 aaKnown RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 ZMYM5Q9UJ78 669 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 RASAL2Q9UJF2 1139 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 FBXO10Q9UK96 956 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 MAD1L1Q9Y6D9 718 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 WDR33Q9C0J8 1336 aaKnown RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 TMCC1O94876 653 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 ADH1AP07327 375 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 HSPD1P10809 573 aaKnown RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 TOP1P11387 765 aaKnown RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 CES1P23141 567 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 GUCA1AP43080 201 aaPredicted RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 SPAG1Q07617 926 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 DMP1Q13316 513 aaPredicted RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 TDRD12Q587J7 1177 aaKnown RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 PRPF38BQ5VTL8 546 aaKnown RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 SNX30Q5VWJ9 437 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 SCN4BQ8IWT1 228 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 ZNF280CQ8ND82 737 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 NT5C3AQ9H0P0 336 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 TMEM51Q9NW97 253 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 CHPF2Q9P2E5 772 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 THEGQ9P2T0 379 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 GPN3Q9UHW5 284 aaPredicted RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 IGSF9BQ9UPX0 1349 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 ZMYM2Q9UBW7 1377 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 CCDC189A1A4V9 331 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 EPB41P11171 864 aaKnown RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 ALDH3A1P30838 453 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 CYP2C19P33261 490 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 RAB27AP51159 221 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 DCTN2Q13561 401 aaKnown RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 GSE1Q14687 1217 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 TGFBRAP1Q8WUH2 860 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 NECTIN4Q96NY8 510 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 FANCEQ9HB96 536 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 ZMYND8Q9ULU4 1186 aaPredicted RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 PLA2G4CQ9UP65 541 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 RUVBL2Q9Y230 463 aaKnown RBP4.48□□□□□ -1.69
USH2A-202ENST00000366942 ZKSCAN5Q9Y2L8 839 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 AK5Q9Y6K8 562 aa4.48□□□□□ -1.69
USH2A-202ENST00000366942 SOS2Q07890 1332 aaPredicted RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 UGGT1Q9NYU2 1555 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 TTLL13PA6NNM8 815 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 F6X3S4 739 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 CCER2I3L3R5 266 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 ASMTLO95671 621 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 SLFN14P0C7P3 912 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 HNF1BP35680 557 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 ABL2P42684 1182 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 MTA1Q13330 715 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 LAMC2Q13753 1193 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 PDIA6Q15084 440 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 MAPRE1Q15691 268 aaKnown RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 SKOR2Q2VWA4 1001 aaPredicted RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 ANKS6Q68DC2 871 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 TAS1R3Q7RTX0 852 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 SLFN12Q8IYM2 578 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 FAM89AQ96GI7 184 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 ZNF558Q96NG5 402 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 NOS1P29475 1434 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 SHANK2Q9UPX8 1470 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 NCOA3Q9Y6Q9 1424 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 CFAP99D6REC4 459 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 hCG_1984214I3L0E3 225 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 HSF2BPO75031 334 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 TNNI1P19237 187 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 CEP55Q53EZ4 464 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 ARSJQ5FYB0 599 aaPredicted RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 RSBN1LQ6PCB5 846 aaPredicted RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 HSPH1Q92598 858 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 SPATA16Q9BXB7 569 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 V9GY48 417 aaPredicted RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 CHMP2AO43633 222 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 N4BP1O75113 896 aaKnown RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 CYP2E1P05181 493 aaPredicted RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 SCNN1BP51168 640 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 PLCD1P51178 756 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 CCDC184Q52MB2 194 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 CFAP157Q5JU67 520 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 SNRNP48Q6IEG0 339 aaKnown RBP4.47□□□□□ -1.69
USH2A-202ENST00000366942 RCSD1Q6JBY9 416 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 KLHL35Q6PF15 583 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 CCHCR1Q8TD31 782 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 STRADBQ9C0K7 418 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 SLC25A13Q9UJS0 675 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 COG5Q9UP83 839 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 CLCA2Q9UQC9 943 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 A0A1W2PP64 1363 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 C17orf102A2RUQ5 167 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 MEIS2O14770 477 aa4.47□□□□□ -1.69
USH2A-202ENST00000366942 LZTS3O60299 673 aaPredicted RBP4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms