RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 TRIP12Q14669 1992 aaPredicted RBP16.17■□□□□ 0.18
VPS29-201ENST00000360579 PPFIA4O75335 1185 aa16.17■□□□□ 0.18
VPS29-201ENST00000360579 PRR29P0C7W0 189 aa16.17■□□□□ 0.18
VPS29-201ENST00000360579 IL9P15248 144 aa16.17■□□□□ 0.18
VPS29-201ENST00000360579 HTRA4P83105 476 aaPredicted RBP16.17■□□□□ 0.18
VPS29-201ENST00000360579 KCNV1Q6PIU1 500 aa16.17■□□□□ 0.18
VPS29-201ENST00000360579 MYOCDQ8IZQ8 938 aa16.17■□□□□ 0.18
VPS29-201ENST00000360579 NEK9Q8TD19 979 aa16.17■□□□□ 0.18
VPS29-201ENST00000360579 SP7Q8TDD2 431 aaPredicted RBP16.17■□□□□ 0.18
VPS29-201ENST00000360579 TBC1D5Q92609 795 aa16.17■□□□□ 0.18
VPS29-201ENST00000360579 C17orf80Q9BSJ5 609 aa16.17■□□□□ 0.18
VPS29-201ENST00000360579 UBA5Q9GZZ9 404 aa16.17■□□□□ 0.18
VPS29-201ENST00000360579 KCNH6Q9H252 994 aa16.17■□□□□ 0.18
VPS29-201ENST00000360579 COL20A1Q9P218 1284 aa16.17■□□□□ 0.18
VPS29-201ENST00000360579 SALL3Q9BXA9 1300 aa16.17■□□□□ 0.18
VPS29-201ENST00000360579 RSPH10B2B2RC85 870 aa16.16■□□□□ 0.18
VPS29-201ENST00000360579 NR3C2P08235 984 aa16.16■□□□□ 0.18
VPS29-201ENST00000360579 RSPH10BP0C881 870 aa16.16■□□□□ 0.18
VPS29-201ENST00000360579 ZNF286BP0CG31 522 aa16.16■□□□□ 0.18
VPS29-201ENST00000360579 HOXD8P13378 290 aaPredicted RBP16.16■□□□□ 0.18
VPS29-201ENST00000360579 EIF2AK2P19525 551 aaKnown RBP16.16■□□□□ 0.18
VPS29-201ENST00000360579 HAND2P61296 217 aa16.16■□□□□ 0.18
VPS29-201ENST00000360579 MBTPS1Q14703 1052 aa16.16■□□□□ 0.18
VPS29-201ENST00000360579 ASPRV1Q53RT3 343 aa16.16■□□□□ 0.18
VPS29-201ENST00000360579 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.16■□□□□ 0.184e-10■■■■□ 25.2
VPS29-201ENST00000360579 ALYREFQ86V81 257 aaKnown RBP16.16■□□□□ 0.18
VPS29-201ENST00000360579 IQCA1Q86XH1 822 aa16.16■□□□□ 0.18
VPS29-201ENST00000360579 ADGRF4Q8IZF3 695 aa16.16■□□□□ 0.18
VPS29-201ENST00000360579 PNMA1Q8ND90 353 aa16.16■□□□□ 0.18
VPS29-201ENST00000360579 DBF4BQ8NFT6 615 aa16.16■□□□□ 0.18
VPS29-201ENST00000360579 FAM227BQ96M60 508 aa16.16■□□□□ 0.18
VPS29-201ENST00000360579 UIMC1Q96RL1 719 aa16.16■□□□□ 0.18
VPS29-201ENST00000360579 PXMP2Q9NR77 195 aa16.16■□□□□ 0.18
VPS29-201ENST00000360579 PRKAG3Q9UGI9 489 aa16.16■□□□□ 0.18
VPS29-201ENST00000360579 SIP14410 1827 aa16.15■□□□□ 0.18
VPS29-201ENST00000360579 A0A0D9SFI3 127 aa16.15■□□□□ 0.18
VPS29-201ENST00000360579 DCXO43602 365 aa16.15■□□□□ 0.18
VPS29-201ENST00000360579 THPOP40225 353 aa16.15■□□□□ 0.18
VPS29-201ENST00000360579 MFAP1P55081 439 aaKnown RBP16.15■□□□□ 0.18
VPS29-201ENST00000360579 EPC2Q52LR7 807 aa16.15■□□□□ 0.18
VPS29-201ENST00000360579 SERINC5Q86VE9 423 aa16.15■□□□□ 0.18
VPS29-201ENST00000360579 FBXO11Q86XK2 927 aa16.15■□□□□ 0.18
VPS29-201ENST00000360579 BANK1Q8NDB2 785 aa16.15■□□□□ 0.18
VPS29-201ENST00000360579 PABPC5Q96DU9 382 aaKnown RBP16.15■□□□□ 0.18
VPS29-201ENST00000360579 YME1L1Q96TA2 773 aa16.15■□□□□ 0.18
VPS29-201ENST00000360579 CPVLQ9H3G5 476 aa16.15■□□□□ 0.18
VPS29-201ENST00000360579 KAT14Q9H8E8 782 aa16.15■□□□□ 0.18
VPS29-201ENST00000360579 PCDHB15Q9Y5E8 787 aa16.15■□□□□ 0.18
VPS29-201ENST00000360579 CCDC171Q6TFL3 1326 aa16.15■□□□□ 0.18
VPS29-201ENST00000360579 H3BNC9 293 aa16.14■□□□□ 0.17
VPS29-201ENST00000360579 NCK2O43639 380 aa16.14■□□□□ 0.17
VPS29-201ENST00000360579 DHX16O60231 1041 aaKnown RBP16.14■□□□□ 0.17
VPS29-201ENST00000360579 QRICH1Q2TAL8 776 aa16.14■□□□□ 0.17
VPS29-201ENST00000360579 PLEKHG4Q58EX7 1191 aa16.14■□□□□ 0.17
VPS29-201ENST00000360579 MYSM1Q5VVJ2 828 aa16.14■□□□□ 0.17
VPS29-201ENST00000360579 TBC1D10CQ8IV04 446 aa16.14■□□□□ 0.17
VPS29-201ENST00000360579 SEPT8Q92599 483 aa16.14■□□□□ 0.17
VPS29-201ENST00000360579 WNT8BQ93098 351 aa16.14■□□□□ 0.17
VPS29-201ENST00000360579 SPATA33Q96N06 139 aa16.14■□□□□ 0.17
VPS29-201ENST00000360579 MAP3K20Q9NYL2 800 aaKnown RBP16.14■□□□□ 0.17
VPS29-201ENST00000360579 C17orf102A2RUQ5 167 aa16.13■□□□□ 0.17
VPS29-201ENST00000360579 H3BQ06 376 aaPredicted RBP16.13■□□□□ 0.17
VPS29-201ENST00000360579 ZNF213O14771 459 aa16.13■□□□□ 0.17
VPS29-201ENST00000360579 CAND2O75155 1236 aa16.13■□□□□ 0.17
VPS29-201ENST00000360579 CFBP00751 764 aa16.13■□□□□ 0.17
VPS29-201ENST00000360579 TGFB3P10600 412 aa16.13■□□□□ 0.17
VPS29-201ENST00000360579 ZNF200P98182 395 aaPredicted RBP16.13■□□□□ 0.17
VPS29-201ENST00000360579 GPM6BQ13491 265 aa16.13■□□□□ 0.17
VPS29-201ENST00000360579 CELF3Q5SZQ8 465 aaKnown RBP16.13■□□□□ 0.17
VPS29-201ENST00000360579 ZNF589Q86UQ0 364 aaPredicted RBP16.13■□□□□ 0.17
VPS29-201ENST00000360579 ANKS1AQ92625 1134 aa16.13■□□□□ 0.17
VPS29-201ENST00000360579 TOP1MTQ969P6 601 aa16.13■□□□□ 0.17
VPS29-201ENST00000360579 ZKSCAN3Q9BRR0 538 aa16.13■□□□□ 0.17
VPS29-201ENST00000360579 AMNQ9BXJ7 453 aa16.13■□□□□ 0.17
VPS29-201ENST00000360579 UPF3BQ9BZI7 483 aaKnown RBP16.13■□□□□ 0.17
VPS29-201ENST00000360579 NSUN3Q9H649 340 aaKnown RBP16.13■□□□□ 0.17
VPS29-201ENST00000360579 POTEB3A0JP26 581 aa16.12■□□□□ 0.17
VPS29-201ENST00000360579 PARP1P09874 1014 aaKnown RBP16.12■□□□□ 0.17
VPS29-201ENST00000360579 HSD17B4P51659 736 aa16.12■□□□□ 0.17
VPS29-201ENST00000360579 PDE1AP54750 535 aa16.12■□□□□ 0.17
VPS29-201ENST00000360579 GHRHRQ02643 423 aa16.12■□□□□ 0.17
VPS29-201ENST00000360579 NMIQ13287 307 aaPredicted RBP16.12■□□□□ 0.17
VPS29-201ENST00000360579 COL19A1Q14993 1142 aa16.12■□□□□ 0.17
VPS29-201ENST00000360579 HSDL1Q3SXM5 330 aa16.12■□□□□ 0.17
VPS29-201ENST00000360579 ANKRD45Q5TZF3 282 aa16.12■□□□□ 0.17
VPS29-201ENST00000360579 DIEXFQ68CQ4 756 aaKnown RBP16.12■□□□□ 0.17
VPS29-201ENST00000360579 POTEBQ6S5H4 581 aa16.12■□□□□ 0.17
VPS29-201ENST00000360579 TMEM192Q8IY95 271 aa16.12■□□□□ 0.17
VPS29-201ENST00000360579 SAMD3Q8N6K7 520 aa16.12■□□□□ 0.17
VPS29-201ENST00000360579 ATP6V0A1Q93050 837 aa16.12■□□□□ 0.17
VPS29-201ENST00000360579 PDCD2LQ9BRP1 358 aa16.12■□□□□ 0.17
VPS29-201ENST00000360579 JMJD4Q9H9V9 463 aa16.12■□□□□ 0.17
VPS29-201ENST00000360579 NEDD4P46934 1319 aa16.12■□□□□ 0.17
VPS29-201ENST00000360579 KIAA1217Q5T5P2 1943 aa16.11■□□□□ 0.17
VPS29-201ENST00000360579 GGPS1O95749 300 aa16.11■□□□□ 0.17
VPS29-201ENST00000360579 MYCLP12524 364 aaPredicted RBP16.11■□□□□ 0.17
VPS29-201ENST00000360579 MRE11P49959 708 aa16.11■□□□□ 0.17
VPS29-201ENST00000360579 ZP2Q05996 745 aa16.11■□□□□ 0.17
VPS29-201ENST00000360579 TCEAL5Q5H9L2 206 aa16.11■□□□□ 0.17
VPS29-201ENST00000360579 EP400NLQ6ZTU2 488 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms