RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 CHORDC1Q9UHD1 332 aaPredicted RBP8.01□□□□□ -1.13
VPS13A-202ENST00000357409 ALKBH2Q6NS38 261 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 CACUL1Q86Y37 369 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 MAGOHBQ96A72 148 aaKnown RBP8.01□□□□□ -1.13
VPS13A-202ENST00000357409 RRAGCQ9HB90 399 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 IFT122Q9HBG6 1241 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 MLXIPLQ9NP71 852 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 C1orf112Q9NSG2 853 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.01□□□□□ -1.13
VPS13A-202ENST00000357409 PCDHA6Q9UN73 950 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 PCDHA8Q9Y5H6 950 aa8.01□□□□□ -1.13
VPS13A-202ENST00000357409 K7ERI5 159 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 DDAH1O94760 285 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 WEE1P30291 646 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 NOP14P78316 857 aaKnown RBP8□□□□□ -1.13
VPS13A-202ENST00000357409 MIS18BP1Q6P0N0 1132 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 MORC4Q8TE76 937 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 AGAP3Q96P47 875 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 MYL7Q01449 175 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 ERCC6LQ2NKX8 1250 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 KRT71Q3SY84 523 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 DYDC2Q96IM9 177 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 LARSQ9P2J5 1176 aaKnown RBP8□□□□□ -1.13
VPS13A-202ENST00000357409 ABCC11Q96J66 1382 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 TAL1P17542 331 aaPredicted RBP8□□□□□ -1.13
VPS13A-202ENST00000357409 CSE1LP55060 971 aaKnown RBP8□□□□□ -1.13
VPS13A-202ENST00000357409 ARHGEF1Q92888 912 aaKnown RBP8□□□□□ -1.13
VPS13A-202ENST00000357409 ATP6V0A1Q93050 837 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 L3MBTL3Q96JM7 780 aaPredicted RBP8□□□□□ -1.13
VPS13A-202ENST00000357409 IGFLR1Q9H665 355 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 TMEM63CQ9P1W3 806 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 CCDC141Q6ZP82 1450 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 SEC31AO94979 1220 aaKnown RBP8□□□□□ -1.13
VPS13A-202ENST00000357409 PDGFRBP09619 1106 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 OR52Z1P0C646 297 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 HADHAP40939 763 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 GPSM2P81274 684 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 COBLL1Q53SF7 1204 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 ZNF772Q68DY9 489 aaPredicted RBP8□□□□□ -1.13
VPS13A-202ENST00000357409 DARS2Q6PI48 645 aaKnown RBP8□□□□□ -1.13
VPS13A-202ENST00000357409 ANKS4BQ8N8V4 417 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 KLF15Q9UIH9 416 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 NPHP3-ACAD11A0A0J9YXS1 232 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 KCNJ18B7U540 433 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 PDE1BQ01064 536 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 KCNJ12Q14500 433 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 NBPF11Q86T75 865 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 FAM76AQ8TAV0 307 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 LCP1P13796 627 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 LIG3P49916 1009 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 AMHR2Q16671 573 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 BRAPQ7Z569 592 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 CNOT6LQ96LI5 555 aaKnown RBP8□□□□□ -1.13
VPS13A-202ENST00000357409 ABCB11O95342 1321 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 SCG2P13521 617 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 PDIA3P30101 505 aaKnown RBP8□□□□□ -1.13
VPS13A-202ENST00000357409 ANKRD20A3Q5VUR7 823 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 ASXL2Q76L83 1435 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 KLHL11Q9NVR0 708 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 ATP9BO43861 1147 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 DNAJB2P25686 324 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 CDK8P49336 464 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 UVSSAQ2YD98 709 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 EHBP1Q8NDI1 1231 aa8□□□□□ -1.13
VPS13A-202ENST00000357409 KIF2AO00139 706 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-202ENST00000357409 EBAG9O00559 213 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 ADORA2BP29275 332 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 GYS2P54840 703 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 MDH1BQ5I0G3 518 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 MCUR1Q96AQ8 359 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 TMEM106CQ9BVX2 250 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 DBNLQ9UJU6 430 aaKnown RBP7.99□□□□□ -1.13
VPS13A-202ENST00000357409 RSPH10B2B2RC85 870 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 USP17L10C9JJH3 530 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 UBE2Q2LH0YL09 131 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 CUTAO60888 179 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 RSPH10BP0C881 870 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 P4HA1P13674 534 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 IGFBP4P22692 258 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 MAPK4P31152 587 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 LRRC71Q8N4P6 559 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 KCTD6Q8NC69 237 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 COG4Q9H9E3 785 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 RPF1Q9H9Y2 349 aaKnown RBP7.99□□□□□ -1.13
VPS13A-202ENST00000357409 SCAF11Q99590 1463 aaKnown RBP7.99□□□□□ -1.13
VPS13A-202ENST00000357409 TOPBP1Q92547 1522 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 CIB2O75838 187 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 RPN1P04843 607 aaKnown RBP7.99□□□□□ -1.13
VPS13A-202ENST00000357409 RARBP10826 455 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 EML3Q32P44 896 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 FAM160B1Q5W0V3 765 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 TBX22Q9Y458 520 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 SLC4A7Q9Y6M7 1214 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 PTK2Q05397 1052 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 NUF2Q9BZD4 464 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 ERICH3Q5RHP9 1530 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 CFAP69A5D8W1 941 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 RBL2Q08999 1139 aa7.99□□□□□ -1.13
VPS13A-202ENST00000357409 THOC5Q13769 683 aaKnown RBP7.99□□□□□ -1.13
VPS13A-202ENST00000357409 SLC7A3Q8WY07 619 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms