RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 PRPF31Q8WWY3 499 aaKnown RBP16.1■□□□□ 0.17
CHD4-201ENST00000357008 SPDL1Q96EA4 605 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 ADPGKQ9BRR6 497 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 GREM2Q9H772 168 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 MLXIPQ9HAP2 919 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 ALDH1B1P30837 517 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 ADD2P35612 726 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 SNX1Q13596 522 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 MUM1L1Q5H9M0 696 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 CCDC68Q9H2F9 335 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 UBAP1LF5GYI3 381 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 hCG_1984214I3L0E3 225 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 MYO1CO00159 1063 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 DNAJC8O75937 253 aaPredicted RBP16.1■□□□□ 0.17
CHD4-201ENST00000357008 SAT1P21673 171 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 ECE1P42892 770 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 SLCO1A2P46721 670 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 CYP27A1Q02318 531 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 ZNF713Q8N859 430 aaPredicted RBP16.1■□□□□ 0.17
CHD4-201ENST00000357008 RASGRP4Q8TDF6 673 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 DNAJC5BQ9UF47 199 aa16.1■□□□□ 0.17
CHD4-201ENST00000357008 ESRRGP62508 458 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 MED10Q9BTT4 135 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 ZMYND12Q9H0C1 365 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 PCDHB4Q9Y5E5 795 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 MT-ND3P03897 115 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 ADCY2Q08462 1091 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 METTL13Q8N6R0 699 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 NDST4Q9H3R1 872 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 SLC7A5Q01650 507 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 DR1Q01658 176 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 MB21D1Q8N884 522 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 PRPF3O43395 683 aaKnown RBP16.09■□□□□ 0.17
CHD4-201ENST00000357008 MX2P20592 715 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 POLA2Q14181 598 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 MMS22LQ6ZRQ5 1243 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 DRC3Q9H069 523 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 MAP3K7O43318 606 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 KRT31Q15323 416 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 HDAC11Q96DB2 347 aa16.09■□□□□ 0.17
CHD4-201ENST00000357008 CCDC188H7C350 402 aa16.08■□□□□ 0.17
CHD4-201ENST00000357008 HNRNPDLO14979 420 aaKnown RBP16.08■□□□□ 0.17
CHD4-201ENST00000357008 GFPT2O94808 682 aa16.08■□□□□ 0.17
CHD4-201ENST00000357008 TMOD1P28289 359 aa16.08■□□□□ 0.17
CHD4-201ENST00000357008 E2F4Q16254 413 aa16.08■□□□□ 0.17
CHD4-201ENST00000357008 N4BP2L2Q92802 583 aaPredicted RBP16.08■□□□□ 0.17
CHD4-201ENST00000357008 MRPL47Q9HD33 250 aaKnown RBP16.08■□□□□ 0.17
CHD4-201ENST00000357008 MAP3K15Q6ZN16 1313 aa16.08■□□□□ 0.17
CHD4-201ENST00000357008 SIRT2Q8IXJ6 389 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 TBCKQ8TEA7 893 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 EFHD1Q9BUP0 239 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 GCC2Q8IWJ2 1684 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 LRRIQ4A6NIV6 560 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 LIFRP42702 1097 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 POLGP54098 1239 aaPredicted RBP16.08■□□□□ 0.16
CHD4-201ENST00000357008 TADA2BQ86TJ2 420 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 ACCSQ96QU6 501 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 GCNT4Q9P109 453 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 IPO11Q9UI26 975 aaKnown RBP16.08■□□□□ 0.16
CHD4-201ENST00000357008 TMEM232C9JQI7 657 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 LRRC63Q05C16 580 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 CC2D1AQ6P1N0 951 aaPredicted RBP16.08■□□□□ 0.16
CHD4-201ENST00000357008 CCDC17Q96LX7 622 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 ANGPTL2Q9UKU9 493 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 PCDHB6Q9Y5E3 794 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 STX1BP61266 288 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 ATG3Q9NT62 314 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 NFU1Q9UMS0 254 aa16.08■□□□□ 0.16
CHD4-201ENST00000357008 LRRN2O75325 713 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 GRM1Q13255 1194 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 EMILIN3Q9NT22 766 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 PRPSAP1Q14558 356 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 ARL6IP4Q66PJ3 421 aaKnown RBP16.07■□□□□ 0.16
CHD4-201ENST00000357008 AS3MTQ9HBK9 375 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 ATP7AQ04656 1500 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 EXOC1LA0A1B0GW35 172 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 CPP00450 1065 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 PROSER3Q2NL68 480 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 PPWD1Q96BP3 646 aaKnown RBP16.07■□□□□ 0.16
CHD4-201ENST00000357008 NRBP2Q9NSY0 501 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 ARID5BQ14865 1188 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 TRIM56Q9BRZ2 755 aaKnown RBP16.07■□□□□ 0.16
CHD4-201ENST00000357008 TMEM206Q9H813 350 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 ATP10DQ9P241 1426 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 TBK1Q9UHD2 729 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 KMT5BQ4FZB7 885 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 ANKFY1Q9P2R3 1169 aa16.07■□□□□ 0.16
CHD4-201ENST00000357008 MCF2LO15068 1137 aa16.06■□□□□ 0.16
CHD4-201ENST00000357008 ZBTB17Q13105 803 aa16.06■□□□□ 0.16
CHD4-201ENST00000357008 PPP2R5AQ15172 486 aa16.06■□□□□ 0.16
CHD4-201ENST00000357008 RAPH1Q70E73 1250 aa16.06■□□□□ 0.16
CHD4-201ENST00000357008 DISC1Q9NRI5 854 aa16.06■□□□□ 0.16
CHD4-201ENST00000357008 NOP53Q9NZM5 478 aaKnown RBP16.06■□□□□ 0.16
CHD4-201ENST00000357008 OSBP2Q969R2 916 aa16.06■□□□□ 0.16
CHD4-201ENST00000357008 MAPK13O15264 365 aa16.06■□□□□ 0.16
CHD4-201ENST00000357008 ITKQ08881 620 aa16.06■□□□□ 0.16
CHD4-201ENST00000357008 WDR11Q9BZH6 1224 aa16.06■□□□□ 0.16
CHD4-201ENST00000357008 RESP18Q5W5W9 173 aa16.06■□□□□ 0.16
CHD4-201ENST00000357008 LRRC43Q8N309 656 aa16.06■□□□□ 0.16
CHD4-201ENST00000357008 SUGCTQ9HAC7 445 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms