RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 NEUROG2Q9H2A3 272 aa11.18□□□□□ -0.62
PTPRA-203ENST00000356147 BARHL2Q9NY43 387 aa11.18□□□□□ -0.62
PTPRA-203ENST00000356147 ZNF804BA4D1E1 1349 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 ZNF142P52746 1687 aaPredicted RBP11.17□□□□□ -0.62
PTPRA-203ENST00000356147 SLC37A4O43826 429 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 CAMTA2O94983 1202 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 ADAMTS2O95450 1211 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 EPB41P11171 864 aaKnown RBP11.17□□□□□ -0.62
PTPRA-203ENST00000356147 ACTN1P12814 892 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 MDH1P40925 334 aaKnown RBP11.17□□□□□ -0.62
PTPRA-203ENST00000356147 CDK17Q00537 523 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 FAM83BQ5T0W9 1011 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 CCDC91Q7Z6B0 441 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 MAPKAPK5Q8IW41 473 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 CNPY4Q8N129 248 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 PRPF38AQ8NAV1 312 aaKnown RBP11.17□□□□□ -0.62
PTPRA-203ENST00000356147 CABS1Q96KC9 395 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 TMEM47Q9BQJ4 181 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 DDX47Q9H0S4 455 aaKnown RBP11.17□□□□□ -0.62
PTPRA-203ENST00000356147 GDF3Q9NR23 364 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 NPHP3-ACAD11A0A0J9YXS1 232 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 CEP104O60308 925 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 ERVK-9P63128 1117 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 NONOQ15233 471 aaKnown RBP eCLIP11.17□□□□□ -0.62
PTPRA-203ENST00000356147 ASTE1Q2TB18 679 aaPredicted RBP11.17□□□□□ -0.62
PTPRA-203ENST00000356147 FIGNQ5HY92 759 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 ADAT2Q7Z6V5 191 aaKnown RBP11.17□□□□□ -0.62
PTPRA-203ENST00000356147 CEP57Q86XR8 500 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 DZIP1Q86YF9 867 aaKnown RBP11.17□□□□□ -0.62
PTPRA-203ENST00000356147 SH3RF3Q8TEJ3 882 aaPredicted RBP11.17□□□□□ -0.62
PTPRA-203ENST00000356147 TGFBRAP1Q8WUH2 860 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 DDX12PQ92771 950 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 COA7Q96BR5 231 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 ATP6V1G3Q96LB4 118 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 PNMA5Q96PV4 448 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 PIGSQ96S52 555 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 CEP89Q96ST8 783 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 CXorf56Q9H5V9 222 aa11.17□□□□□ -0.62
PTPRA-203ENST00000356147 FRMPD2Q68DX3 1309 aaPredicted RBP11.17□□□□□ -0.62
PTPRA-203ENST00000356147 PRLRP16471 622 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 HNRNPH3P31942 346 aaKnown RBP11.16□□□□□ -0.62
PTPRA-203ENST00000356147 EIF6P56537 245 aaKnown RBP11.16□□□□□ -0.62
PTPRA-203ENST00000356147 ECM1Q16610 540 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 SLC9C1Q4G0N8 1177 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 KDM7AQ6ZMT4 941 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 CCDC13Q8IYE1 715 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 UBLCP1Q8WVY7 318 aaPredicted RBP11.16□□□□□ -0.62
PTPRA-203ENST00000356147 TMCO5BA8MYB1 307 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 NOL4O94818 638 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 PDHBP11177 359 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 SFMBT2Q5VUG0 894 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 LRRC55Q6ZSA7 311 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 ZNF572Q7Z3I7 529 aaPredicted RBP11.16□□□□□ -0.62
PTPRA-203ENST00000356147 NEK8Q86SG6 692 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 CLEC10AQ8IUN9 316 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 KIRREL3Q8IZU9 778 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 ZNF444Q8N0Y2 327 aaPredicted RBP11.16□□□□□ -0.62
PTPRA-203ENST00000356147 SNX29Q8TEQ0 813 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 LARP4BQ92615 738 aaKnown RBP11.16□□□□□ -0.62
PTPRA-203ENST00000356147 CCDC87Q9NVE4 849 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 PAPPAQ13219 1627 aa11.16□□□□□ -0.62
PTPRA-203ENST00000356147 HSD17B3P37058 310 aa11.15□□□□□ -0.62
PTPRA-203ENST00000356147 AMPD3Q01432 767 aa11.15□□□□□ -0.62
PTPRA-203ENST00000356147 ITGB3BPQ13352 177 aaPredicted RBP11.15□□□□□ -0.62
PTPRA-203ENST00000356147 ITPK1Q13572 414 aa11.15□□□□□ -0.62
PTPRA-203ENST00000356147 GRM4Q14833 912 aa11.15□□□□□ -0.62
PTPRA-203ENST00000356147 E2F5Q15329 346 aa11.15□□□□□ -0.62
PTPRA-203ENST00000356147 EP400NLQ6ZTU2 488 aa11.15□□□□□ -0.62
PTPRA-203ENST00000356147 CCDC84Q86UT8 332 aaPredicted RBP11.15□□□□□ -0.62
PTPRA-203ENST00000356147 MDM1Q8TC05 714 aa11.15□□□□□ -0.62
PTPRA-203ENST00000356147 CELF4Q9BZC1 486 aaKnown RBP11.15□□□□□ -0.62
PTPRA-203ENST00000356147 DPH5Q9H2P9 285 aa11.15□□□□□ -0.62
PTPRA-203ENST00000356147 CACNA1SQ13698 1873 aa11.15□□□□□ -0.62
PTPRA-203ENST00000356147 GRID2IPA4D2P6 1211 aa11.15□□□□□ -0.62
PTPRA-203ENST00000356147 ITGA4P13612 1032 aa11.15□□□□□ -0.62
PTPRA-203ENST00000356147 COPB2P35606 906 aa11.15□□□□□ -0.62
PTPRA-203ENST00000356147 UAP1Q16222 522 aaPredicted RBP11.15□□□□□ -0.62
PTPRA-203ENST00000356147 SWT1Q5T5J6 900 aaKnown RBP11.15□□□□□ -0.62
PTPRA-203ENST00000356147 FAM212AQ96EL1 285 aa11.15□□□□□ -0.62
PTPRA-203ENST00000356147 CCDC114Q96M63 670 aa11.15□□□□□ -0.62
PTPRA-203ENST00000356147 INPP4AQ96PE3 977 aaPredicted RBP11.15□□□□□ -0.62
PTPRA-203ENST00000356147 CNOT8Q9UFF9 292 aaKnown RBP11.15□□□□□ -0.62
PTPRA-203ENST00000356147 FRMD3A2A2Y4 597 aa11.15□□□□□ -0.63
PTPRA-203ENST00000356147 SMIM23A6NLE4 172 aa11.15□□□□□ -0.63
PTPRA-203ENST00000356147 PHF20L1A8MW92 1017 aa11.15□□□□□ -0.63
PTPRA-203ENST00000356147 OPLAHO14841 1288 aa11.15□□□□□ -0.63
PTPRA-203ENST00000356147 LCA5LO95447 670 aa11.15□□□□□ -0.63
PTPRA-203ENST00000356147 MYL1P05976 194 aa11.15□□□□□ -0.63
PTPRA-203ENST00000356147 CTNNA1P35221 906 aaKnown RBP11.15□□□□□ -0.63
PTPRA-203ENST00000356147 ITIH3Q06033 890 aa11.15□□□□□ -0.63
PTPRA-203ENST00000356147 KLHL30Q0D2K2 578 aa11.15□□□□□ -0.63
PTPRA-203ENST00000356147 CALCRLQ16602 461 aa11.15□□□□□ -0.63
PTPRA-203ENST00000356147 SOGA3Q5TF21 947 aa11.15□□□□□ -0.63
PTPRA-203ENST00000356147 CYFIP2Q96F07 1278 aa11.15□□□□□ -0.63
PTPRA-203ENST00000356147 SCLT1Q96NL6 688 aa11.15□□□□□ -0.63
PTPRA-203ENST00000356147 ARPP21Q9UBL0 812 aaPredicted RBP11.15□□□□□ -0.63
PTPRA-203ENST00000356147 AMACRQ9UHK6 382 aa11.15□□□□□ -0.63
PTPRA-203ENST00000356147 NOVA2Q9UNW9 492 aaKnown RBP11.15□□□□□ -0.63
PTPRA-203ENST00000356147 PLCH1Q4KWH8 1693 aa11.15□□□□□ -0.63
PTPRA-203ENST00000356147 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms