RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 WDR35Q9P2L0 1181 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 MYH10P35580 1976 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 B4E1Z4 1266 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 HIP1RO75146 1068 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 KRT2P35908 639 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 ESCO1Q5FWF5 840 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 C1orf141Q5JVX7 400 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 ANKRD13DQ6ZTN6 518 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 ARHGAP27Q6ZUM4 889 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 ERICH1Q86X53 443 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 C2CD5Q86YS7 1000 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 OR2W6PQ8NHA6 318 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 RBM41Q96IZ5 413 aaKnown RBP20.3■□□□□ 0.84
SMPD1-201ENST00000342245 INPP4AQ96PE3 977 aaPredicted RBP20.3■□□□□ 0.84
SMPD1-201ENST00000342245 MTA3Q9BTC8 594 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 TRIM4Q9C037 500 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 PUS7LQ9H0K6 701 aaKnown RBP20.3■□□□□ 0.84
SMPD1-201ENST00000342245 ECT2Q9H8V3 914 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 ARHGEF3Q9NR81 526 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 GDAQ9Y2T3 454 aa20.3■□□□□ 0.84
SMPD1-201ENST00000342245 SSU72P8A0A1W2PR75 194 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 SART1O43290 800 aaKnown RBP20.29■□□□□ 0.84
SMPD1-201ENST00000342245 RARAP10276 462 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 MSH2P43246 934 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 ATP2C1P98194 919 aaPredicted RBP20.29■□□□□ 0.84
SMPD1-201ENST00000342245 FAM133BQ5BKY9 247 aaKnown RBP20.29■□□□□ 0.84
SMPD1-201ENST00000342245 XAGE3Q8WTP9 111 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 SUDS3Q9H7L9 328 aaPredicted RBP20.29■□□□□ 0.84
SMPD1-201ENST00000342245 MYH7P12883 1935 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 LAMB4A4D0S4 1761 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 BACH1O14867 736 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 MMEP08473 750 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 COPS2P61201 443 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 ERVK-9P63128 1117 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 GALNTL6Q49A17 601 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 LMBR1LQ6UX01 489 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 MPRIPQ6WCQ1 1025 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 ATL2Q8NHH9 583 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 FBF1Q8TES7 1133 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 STAMQ92783 540 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 KLHL29Q96CT2 875 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 VCXQ9H320 206 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 CNNM2Q9H8M5 875 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 FBXL5Q9UKA1 691 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 LRP6O75581 1613 aa20.29■□□□□ 0.84
SMPD1-201ENST00000342245 TRIM49BA6NDI0 452 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 KCNJ2P63252 427 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 PPP2R5BQ15173 497 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 HHATQ5VTY9 493 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 TTI2Q6NXR4 508 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 TMTC2Q8N394 836 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 RAB3IPQ96QF0 476 aaPredicted RBP20.28■□□□□ 0.84
SMPD1-201ENST00000342245 FAM167BQ9BTA0 163 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 EDEM3Q9BZQ6 932 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 ATRNO75882 1429 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 SIPA1L3O60292 1781 aaPredicted RBP20.28■□□□□ 0.84
SMPD1-201ENST00000342245 LTN1O94822 1766 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 UBE2Q2LH0YL09 131 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 EYA2O00167 538 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 IGF2BP3O00425 579 aaKnown RBP eCLIP20.28■□□□□ 0.84
SMPD1-201ENST00000342245 RANBP1P43487 201 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 MEI1Q5TIA1 1274 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 NUGGCQ68CJ6 796 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 OXER1Q8TDS5 423 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 TRAPPC9Q96Q05 1148 aa20.28■□□□□ 0.84
SMPD1-201ENST00000342245 A0A087WZG4 1122 aa20.27■□□□□ 0.84
SMPD1-201ENST00000342245 RBAK-RBAKDNI3L0D1 243 aa20.27■□□□□ 0.84
SMPD1-201ENST00000342245 SKIV2L2P42285 1042 aaKnown RBP20.27■□□□□ 0.84
SMPD1-201ENST00000342245 MAP3K12Q12852 859 aa20.27■□□□□ 0.84
SMPD1-201ENST00000342245 COPS6Q7L5N1 327 aa20.27■□□□□ 0.84
SMPD1-201ENST00000342245 ANKRD23Q86SG2 305 aa20.27■□□□□ 0.84
SMPD1-201ENST00000342245 CSGALNACT2Q8N6G5 542 aa20.27■□□□□ 0.84
SMPD1-201ENST00000342245 TAF4BQ92750 862 aa20.27■□□□□ 0.84
SMPD1-201ENST00000342245 MTMR8Q96EF0 704 aa20.27■□□□□ 0.84
SMPD1-201ENST00000342245 MYL10Q9BUA6 226 aa20.27■□□□□ 0.84
SMPD1-201ENST00000342245 NOC4LQ9BVI4 516 aaKnown RBP20.27■□□□□ 0.84
SMPD1-201ENST00000342245 AGAP1Q9UPQ3 857 aa20.27■□□□□ 0.84
SMPD1-201ENST00000342245 PLEKP08567 350 aaPredicted RBP20.27■□□□□ 0.83
SMPD1-201ENST00000342245 PYGBP11216 843 aa20.27■□□□□ 0.83
SMPD1-201ENST00000342245 ATP6V1C1P21283 382 aa20.27■□□□□ 0.83
SMPD1-201ENST00000342245 MMP13P45452 471 aa20.27■□□□□ 0.83
SMPD1-201ENST00000342245 MTIF2P46199 727 aaKnown RBP20.27■□□□□ 0.83
SMPD1-201ENST00000342245 PDE6CP51160 858 aa20.27■□□□□ 0.83
SMPD1-201ENST00000342245 BNIP1Q12981 228 aa20.27■□□□□ 0.83
SMPD1-201ENST00000342245 CCDC84Q86UT8 332 aaPredicted RBP20.27■□□□□ 0.83
SMPD1-201ENST00000342245 ATXN2LQ8WWM7 1075 aaKnown RBP20.27■□□□□ 0.83
SMPD1-201ENST00000342245 LPIN2Q92539 896 aa20.27■□□□□ 0.83
SMPD1-201ENST00000342245 PBKQ96KB5 322 aa20.27■□□□□ 0.83
SMPD1-201ENST00000342245 MTRQ99707 1265 aa20.27■□□□□ 0.83
SMPD1-201ENST00000342245 MMTAG2Q9BU76 263 aaKnown RBP20.27■□□□□ 0.83
SMPD1-201ENST00000342245 RNF26Q9BY78 433 aaPredicted RBP20.27■□□□□ 0.83
SMPD1-201ENST00000342245 ADAM22Q9P0K1 906 aa20.27■□□□□ 0.83
SMPD1-201ENST00000342245 PRAMEF22A3QJZ6 481 aa20.26■□□□□ 0.83
SMPD1-201ENST00000342245 PDE6BP35913 854 aa20.26■□□□□ 0.83
SMPD1-201ENST00000342245 CASP7P55210 303 aa20.26■□□□□ 0.83
SMPD1-201ENST00000342245 PPP1R15BQ5SWA1 713 aa20.26■□□□□ 0.83
SMPD1-201ENST00000342245 ANO7Q6IWH7 933 aa20.26■□□□□ 0.83
SMPD1-201ENST00000342245 MAPK8IP1Q9UQF2 711 aa20.26■□□□□ 0.83
SMPD1-201ENST00000342245 C2CD2Q9Y426 696 aa20.26■□□□□ 0.83
SMPD1-201ENST00000342245 MYH7BA7E2Y1 1941 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms