RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 PPP1R18Q6NYC8 613 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 GALNT4Q8N4A0 578 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 CCDC63Q8NA47 563 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 USP33Q8TEY7 942 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 MARCH7Q9H992 704 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 FIS1Q9Y3D6 152 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ZNF131P52739 623 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 CTAGE6Q86UF2 777 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 BRINP2Q9C0B6 783 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 STK24Q9Y6E0 443 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 DDX39AO00148 427 aaKnown RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 RPN1P04843 607 aaKnown RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 IFT20Q8IY31 132 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 PIF1Q9H611 641 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 SMCHD1A6NHR9 2005 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 SLC3A2P08195 630 aaKnown RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 KRT7P08729 469 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 PCP11498 1178 aaKnown RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 NR1H3Q13133 447 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 TADA2BQ86TJ2 420 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ZDHHC9Q9Y397 364 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 PEX1O43933 1283 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 SERPINI2O75830 405 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 Q6ZUG5 572 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ANKRD44Q8N8A2 993 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ANKIB1Q9P2G1 1089 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 C6orf163Q5TEZ5 329 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 BSPRYQ5W0U4 402 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ZNF579Q8NAF0 562 aaKnown RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 NETO2Q8NC67 525 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 HAUS4Q9H6D7 363 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 NR2E3Q9Y5X4 410 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ARID2Q68CP9 1835 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 GOLGA8KD6RF30 607 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 DGKIO75912 1065 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 KLK7P49862 253 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 TTC39AQ5SRH9 613 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 CCDC121Q6ZUS5 278 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 CPLX4Q7Z7G2 160 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 PTPRHQ9HD43 1115 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 HIP1RO75146 1068 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ARHGEF25Q86VW2 580 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 RMND1Q9NWS8 449 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ALDH1L1O75891 902 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 RMI1Q9H9A7 625 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 MLXIPQ9HAP2 919 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 IDEP14735 1019 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 PPP2R3CQ969Q6 453 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 RAB21Q9UL25 225 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ZFYVE16Q7Z3T8 1539 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ABCB1P08183 1280 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 KIF5AQ12840 1032 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 TDGQ13569 410 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 LPIN2Q92539 896 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 C8orf4Q9NR00 106 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 AREL1O15033 823 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 N4BP3O15049 544 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 OPHN1O60890 802 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ATP5JP18859 108 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 CCNG1P51959 295 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 CCDC13Q8IYE1 715 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 SPTLC1O15269 473 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 CCDC80Q76M96 950 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 HDGFL2Q7Z4V5 671 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 CES2O00748 559 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 SEC24DO94855 1032 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 USH1GQ495M9 461 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 KMT5BQ4FZB7 885 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 MSANTD4Q8NCY6 345 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ABCC12Q96J65 1359 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 NEO1Q92859 1461 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 TUBA4AP68366 448 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 ILF2Q12905 390 aaKnown RBP3.86□□□□□ -1.79
SYNE1-201ENST00000341594 TSNAXIP1Q2TAA8 658 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 DYMQ7RTS9 669 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 LRRC8AQ8IWT6 810 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 AGBL1Q96MI9 1066 aa3.86□□□□□ -1.79
SYNE1-201ENST00000341594 KRT86O43790 486 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 YEATS4O95619 227 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 CUL1Q13616 776 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 FAM47AQ5JRC9 791 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 OLFML2BQ68BL8 750 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 LEO1Q8WVC0 666 aaPredicted RBP3.85□□□□□ -1.79
SYNE1-201ENST00000341594 UNKQ9C0B0 810 aaKnown RBP3.85□□□□□ -1.79
SYNE1-201ENST00000341594 RRP15Q9Y3B9 282 aaKnown RBP3.85□□□□□ -1.79
SYNE1-201ENST00000341594 HARSP12081 509 aaKnown RBP3.85□□□□□ -1.79
SYNE1-201ENST00000341594 KRT9P35527 623 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 ZBTB16Q05516 673 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 EZH2Q15910 746 aaKnown RBP3.85□□□□□ -1.79
SYNE1-201ENST00000341594 PPP1R42Q7Z4L9 355 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 DZIP3Q86Y13 1208 aaKnown RBP3.85□□□□□ -1.79
SYNE1-201ENST00000341594 STMN2Q93045 179 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 EID1Q9Y6B2 187 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 DUSP10Q9Y6W6 482 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 OVOS2A0A0G2JMS6 1433 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 FANCCQ00597 558 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 UBE3AQ05086 875 aa3.85□□□□□ -1.79
SYNE1-201ENST00000341594 RBL2Q08999 1139 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms