RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 PDIA5Q14554 519 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 PPP4R3AQ6IN85 833 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 CENPPQ6IPU0 288 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 MIGA2Q7L4E1 593 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 DHX36Q9H2U1 1008 aaKnown RBP11.5□□□□□ -0.57
LIMA1-201ENST00000341247 NDST4Q9H3R1 872 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 BCAS3Q9H6U6 928 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 VEZTQ9HBM0 779 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 NLRC4Q9NPP4 1024 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 FHOD1Q9Y613 1164 aa11.5□□□□□ -0.57
LIMA1-201ENST00000341247 TULP1O00294 542 aaPredicted RBP11.49□□□□□ -0.57
LIMA1-201ENST00000341247 MED24O75448 989 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 PLA2G4BP0C869 781 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 CCDC40Q4G0X9 1142 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 RBM26Q5T8P6 1007 aaKnown RBP11.49□□□□□ -0.57
LIMA1-201ENST00000341247 CCDC174Q6PII3 467 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 NOC3LQ8WTT2 800 aaKnown RBP11.49□□□□□ -0.57
LIMA1-201ENST00000341247 DNAJC7Q99615 494 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 BRCA2P51587 3418 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 MYH7BA7E2Y1 1941 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 MEIS2O14770 477 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 IPO7O95373 1038 aaKnown RBP11.49□□□□□ -0.57
LIMA1-201ENST00000341247 ZNF76P36508 570 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 ARHGAP4P98171 946 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 VWA3BQ502W6 1294 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 FAM26FQ5R3K3 315 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 RRAGAQ7L523 313 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 FBXO11Q86XK2 927 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 ANKRD13CQ8N6S4 541 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 ACER1Q8TDN7 264 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 TBC1D5Q92609 795 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 FAM170AA1A519 330 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 SPDYE3A6NKU9 549 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 CHMP2AO43633 222 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 ARID5AQ03989 594 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 BMS1Q14692 1282 aaKnown RBP11.49□□□□□ -0.57
LIMA1-201ENST00000341247 TMEM119Q4V9L6 283 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 RSRC2Q7L4I2 434 aaKnown RBP11.49□□□□□ -0.57
LIMA1-201ENST00000341247 SRGAP1Q7Z6B7 1085 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 MYOCDQ8IZQ8 938 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 JAKMIP2Q96AA8 810 aa11.49□□□□□ -0.57
LIMA1-201ENST00000341247 BMP2KQ9NSY1 1161 aaPredicted RBP11.49□□□□□ -0.57
LIMA1-201ENST00000341247 ATF5Q9Y2D1 282 aaPredicted RBP11.49□□□□□ -0.57
LIMA1-201ENST00000341247 CFBP00751 764 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 FECHP22830 423 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 TMEM179Q6ZVK1 233 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 DNAJC19Q96DA6 116 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 PSMB7Q99436 277 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 AMNQ9BXJ7 453 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 EHD4Q9H223 541 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 DEF6Q9H4E7 631 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.48□□□□□ -0.57
LIMA1-201ENST00000341247 NYAP2Q9P242 653 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 PVALEFA0A1B0GWK0 134 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 FAM86B1E9PN63 330 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 ATP1A1P05023 1023 aaKnown RBP11.48□□□□□ -0.57
LIMA1-201ENST00000341247 FAM86B2P0C5J1 330 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 SYDE2Q5VT97 1194 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 PPP1R18Q6NYC8 613 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 CCDC42Q96M95 316 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 SUGCTQ9HAC7 445 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 SASH3O75995 380 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 BMP3P12645 472 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 ZBED6P86452 979 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 ZNF771Q7L3S4 317 aaPredicted RBP11.48□□□□□ -0.57
LIMA1-201ENST00000341247 TRMT1LQ7Z2T5 733 aaKnown RBP11.48□□□□□ -0.57
LIMA1-201ENST00000341247 GUF1Q8N442 669 aaKnown RBP11.48□□□□□ -0.57
LIMA1-201ENST00000341247 GPR161Q8N6U8 529 aaKnown RBP11.48□□□□□ -0.57
LIMA1-201ENST00000341247 NOA1Q8NC60 698 aaKnown RBP11.48□□□□□ -0.57
LIMA1-201ENST00000341247 MTMR8Q96EF0 704 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 TSG101Q99816 390 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 TTYH3Q9C0H2 523 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 ARFGEF1Q9Y6D6 1849 aa11.48□□□□□ -0.57
LIMA1-201ENST00000341247 SFI1A8K8P3 1242 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 CYLC1P35663 651 aaPredicted RBP11.47□□□□□ -0.57
LIMA1-201ENST00000341247 KIAA1755Q5JYT7 1200 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 CACNA2D4Q7Z3S7 1137 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 DCAF4Q8WV16 495 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 PNKPQ96T60 521 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 IDI2Q9BXS1 227 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 ZNF277Q9NRM2 450 aaPredicted RBP11.47□□□□□ -0.57
LIMA1-201ENST00000341247 LRRC53A6NM62 1247 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 DNA2P51530 1060 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 CC2D1AQ6P1N0 951 aaPredicted RBP11.47□□□□□ -0.57
LIMA1-201ENST00000341247 ZCCHC17Q9NP64 241 aaKnown RBP11.47□□□□□ -0.57
LIMA1-201ENST00000341247 RGL1Q9NZL6 768 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 MYO6Q9UM54 1294 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 CTAGE15A4D2H0 777 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 ZNF185O15231 689 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 CTAGE8P0CG41 777 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 PLA2G4AP47712 749 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 ORC2Q13416 577 aaPredicted RBP11.47□□□□□ -0.57
LIMA1-201ENST00000341247 MAN2A1Q16706 1144 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 FAM83BQ5T0W9 1011 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 LRRC55Q6ZSA7 311 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 CTAGE6Q86UF2 777 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 CATSPER3Q86XQ3 398 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 CTAGE4Q8IX94 777 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 RABGGTAQ92696 567 aa11.47□□□□□ -0.57
LIMA1-201ENST00000341247 MYO3BQ8WXR4 1341 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms