RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 HPS3Q969F9 1004 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 FMO2Q99518 471 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 NYXQ9GZU5 481 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 NT5C3AQ9H0P0 336 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 TTC7AQ9ULT0 858 aaPredicted RBP9.44□□□□□ -0.9
RTN3-202ENST00000339997 UBN2Q6ZU65 1347 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 GOLGA8MH3BSY2 632 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 ATP8B1O43520 1251 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 PRPF6O94906 941 aaKnown RBP9.44□□□□□ -0.9
RTN3-202ENST00000339997 USP17L8P0C7I0 530 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 SLC12A1Q13621 1099 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 C10orf76Q5T2E6 689 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 E4F1Q66K89 784 aaPredicted RBP9.44□□□□□ -0.9
RTN3-202ENST00000339997 PIGSQ96S52 555 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 NDST4Q9H3R1 872 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 ZNF408Q9H9D4 720 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 PARP2Q9UGN5 583 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 ENO4A6NNW6 628 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 NMT2O60551 498 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 GSTA1P08263 222 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 GSTA2P09210 222 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 CASP2P42575 452 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 SLC12A2P55011 1212 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 BASP1P80723 227 aaKnown RBP9.44□□□□□ -0.9
RTN3-202ENST00000339997 ALKBH5Q6P6C2 394 aaKnown RBP9.44□□□□□ -0.9
RTN3-202ENST00000339997 MIER3Q7Z3K6 550 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 NME8Q8N427 588 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 CLEC11AQ9Y240 323 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 PASKQ96RG2 1323 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 PCDH11XQ9BZA7 1347 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 PCDH11YQ9BZA8 1340 aa9.44□□□□□ -0.9
RTN3-202ENST00000339997 NPC1L1Q9UHC9 1359 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 YARSP54577 528 aaKnown RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 IL9RQ01113 521 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 BBS9Q3SYG4 887 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 ZNF394Q53GI3 561 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 TRAPPC3LQ5T215 181 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 ZC3H18Q86VM9 953 aaKnown RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 PLA2G4DQ86XP0 818 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 KIRREL3Q8IZU9 778 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 MAML1Q92585 1016 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 ATP2A3Q93084 1043 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 GPR101Q96P66 508 aaPredicted RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 CHP1Q99653 195 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 TTC26A0AVF1 554 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 F5H423 210 aaPredicted RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 MMEP08473 750 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 NSFP46459 744 aaKnown RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 OSTNP61366 133 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 ZBED6P86452 979 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 FKBP3Q00688 224 aaKnown RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 KRT81Q14533 505 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 GRAMD1BQ3KR37 738 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 SRRM1Q8IYB3 904 aaKnown RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 POMGNT1Q8WZA1 660 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 ALG13Q9NP73 1137 aaKnown RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 KIAA0232Q92628 1395 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 LRRIQ4A6NIV6 560 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 SART1O43290 800 aaKnown RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 ABL1P00519 1130 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 ATP1A1P05023 1023 aaKnown RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 PDE6CP51160 858 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 DBN1Q16643 649 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 ZNF658Q5TYW1 1059 aaPredicted RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 ZNF746Q6NUN9 644 aaPredicted RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 SESTD1Q86VW0 696 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 CCDC117Q8IWD4 279 aaPredicted RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 PPP4R1Q8TF05 950 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 DACT3Q96B18 629 aaPredicted RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 GCNT4Q9P109 453 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 TAF6LQ9Y6J9 622 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 SETD1AO15047 1707 aaKnown RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 UHRF1BP1LA0JNW5 1464 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 SHPRHQ149N8 1683 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 INHBAP08476 426 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 TAF12Q16514 161 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 FAM135BQ49AJ0 1406 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.43□□□□□ -0.9
RTN3-202ENST00000339997 CROCCP2Q86T23 111 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 FMR1NBQ8N0W7 255 aaPredicted RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 P3H4Q92791 437 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 PPP1R16BQ96T49 567 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 CALN1Q9BXU9 219 aa9.43□□□□□ -0.9
RTN3-202ENST00000339997 FOXP1Q9H334 677 aaPredicted RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 UBE2TQ9NPD8 197 aaPredicted RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 CCNL1Q9UK58 526 aaPredicted RBP9.43□□□□□ -0.9
RTN3-202ENST00000339997 ABCC2Q92887 1545 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 PPFIA2O75334 1257 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 SLC4A1P02730 911 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 KITP10721 976 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 LONP1P36776 959 aaKnown RBP9.42□□□□□ -0.9
RTN3-202ENST00000339997 SATB1Q01826 763 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 PPP2R5BQ15173 497 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 MMEL1Q495T6 779 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 MYLK4Q86YV6 388 aaPredicted RBP9.42□□□□□ -0.9
RTN3-202ENST00000339997 CEP70Q8NHQ1 597 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 IL25Q9H293 177 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 ABHD10Q9NUJ1 306 aa9.42□□□□□ -0.9
RTN3-202ENST00000339997 EXOC7Q9UPT5 735 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms