RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 RNPEPQ9H4A4 650 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 PANK4Q9NVE7 773 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 MBD4O95243 580 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 MOCS3O95396 460 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 PPP1R13BQ96KQ4 1090 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 SLITRK6Q9H5Y7 841 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 ARHGEF3Q9NR81 526 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 LRFN2Q9ULH4 789 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 CFBP00751 764 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 MDM2Q00987 491 aaPredicted RBP13.84□□□□□ -0.19
USP47-202ENST00000339865 IMPG1Q17R60 797 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 CCDC127Q96BQ5 260 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 LRRC37BQ96QE4 947 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 ASPSCR1Q9BZE9 553 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 TADA2BQ86TJ2 420 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 CCHCR1Q8TD31 782 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 MTRQ99707 1265 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 MIS12Q9H081 205 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.84□□□□□ -0.19
USP47-202ENST00000339865 KIAA1468Q9P260 1216 aa13.84□□□□□ -0.19
USP47-202ENST00000339865 TMEM191CA6NGB0 347 aa13.83□□□□□ -0.19
USP47-202ENST00000339865 RASGRF2O14827 1237 aa13.83□□□□□ -0.19
USP47-202ENST00000339865 KRT7P08729 469 aa13.83□□□□□ -0.19
USP47-202ENST00000339865 TMEM191BP0C7N4 346 aa13.83□□□□□ -0.19
USP47-202ENST00000339865 TCF3P15923 654 aa13.83□□□□□ -0.19
USP47-202ENST00000339865 PSMD7P51665 324 aa13.83□□□□□ -0.19
USP47-202ENST00000339865 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.83□□□□□ -0.19
USP47-202ENST00000339865 PCDHB4Q9Y5E5 795 aa13.83□□□□□ -0.19
USP47-202ENST00000339865 HNRNPH2P55795 449 aaKnown RBP13.83□□□□□ -0.2
USP47-202ENST00000339865 BEND6Q5SZJ8 279 aaPredicted RBP13.83□□□□□ -0.2
USP47-202ENST00000339865 GPBP1Q86WP2 473 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 DIS3L2Q8IYB7 885 aaKnown RBP13.83□□□□□ -0.2
USP47-202ENST00000339865 ANKRD44Q8N8A2 993 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 KDRP35968 1356 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 DEAF1O75398 565 aaPredicted RBP13.83□□□□□ -0.2
USP47-202ENST00000339865 CA4P22748 312 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 CHMLP26374 656 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 CYTH1Q15438 398 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 MYOCDQ8IZQ8 938 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 KCTD6Q8NC69 237 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 ZBTB18Q99592 522 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 ENO4A6NNW6 628 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 ESRRBO95718 433 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 IMPDH2P12268 514 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 TFCP2Q12800 502 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 KHDRBS2Q5VWX1 349 aaKnown RBP13.83□□□□□ -0.2
USP47-202ENST00000339865 DZIP3Q86Y13 1208 aaKnown RBP13.83□□□□□ -0.2
USP47-202ENST00000339865 TTC17Q96AE7 1141 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 CNGB3Q9NQW8 809 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 STOML1Q9UBI4 398 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 CCDC141Q6ZP82 1450 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 GAS7O60861 476 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 MAPK4P31152 587 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 FTOQ9C0B1 505 aaKnown RBP eCLIP13.83□□□□□ -0.2
USP47-202ENST00000339865 KCNJ14Q9UNX9 436 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 TRIM33Q9UPN9 1127 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 TECP42680 631 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 DHX9Q08211 1270 aaKnown RBP13.83□□□□□ -0.2
USP47-202ENST00000339865 PTK2BQ14289 1009 aa13.83□□□□□ -0.2
USP47-202ENST00000339865 HSPA4LO95757 839 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 DARS2Q6PI48 645 aaKnown RBP13.82□□□□□ -0.2
USP47-202ENST00000339865 TMEM87BQ96K49 555 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 YIPF2Q9BWQ6 316 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 BRD8Q9H0E9 1235 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 GLT8D2Q9H1C3 349 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 VPS54Q9P1Q0 977 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 OTUD7BQ6GQQ9 843 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 NME9Q86XW9 330 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 GFM2Q969S9 779 aaKnown RBP13.82□□□□□ -0.2
USP47-202ENST00000339865 PLEKHG3A1L390 1219 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 SLC27A2O14975 620 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 DMP1Q13316 513 aaPredicted RBP13.82□□□□□ -0.2
USP47-202ENST00000339865 USP28Q96RU2 1077 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 CALN1Q9BXU9 219 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 EMILIN1Q9Y6C2 1016 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 KDM3AQ9Y4C1 1321 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 NFIBO00712 420 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 TMPRSS15P98073 1019 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 BBS5Q8N3I7 341 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 PYROXD1Q8WU10 500 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 GLG1Q92896 1179 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 EXOC4Q96A65 974 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 SNX25Q9H3E2 840 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 APOBEC2Q9Y235 224 aaKnown RBP13.82□□□□□ -0.2
USP47-202ENST00000339865 DDAH1O94760 285 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 PPP6R3Q5H9R7 873 aaPredicted RBP13.82□□□□□ -0.2
USP47-202ENST00000339865 RSRC2Q7L4I2 434 aaKnown RBP13.82□□□□□ -0.2
USP47-202ENST00000339865 SUPT20HQ8NEM7 779 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 USE1Q9NZ43 259 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 CCDC149Q6ZUS6 474 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 SLC26A7Q8TE54 656 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 ZMYND12Q9H0C1 365 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 SLC38A10Q9HBR0 1119 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 TRAF3IP3Q9Y228 551 aa13.82□□□□□ -0.2
USP47-202ENST00000339865 SLC1A4P43007 532 aa13.81□□□□□ -0.2
USP47-202ENST00000339865 NSUN2Q08J23 767 aaKnown RBP eCLIP13.81□□□□□ -0.2
USP47-202ENST00000339865 HAUS4Q9H6D7 363 aa13.81□□□□□ -0.2
USP47-202ENST00000339865 TBC1D23Q9NUY8 699 aa13.81□□□□□ -0.2
USP47-202ENST00000339865 CDC23Q9UJX2 597 aa13.81□□□□□ -0.2
USP47-202ENST00000339865 PI4K2BG5E9Z4 385 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms