RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 SCINQ9Y6U3 715 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 PTPRUQ92729 1446 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 K7ENM7 598 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 TNNI1P19237 187 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 AP3B2Q13367 1082 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 KRT81Q14533 505 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 KCNB1Q14721 858 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 PSMB7Q99436 277 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 FMN2Q9NZ56 1722 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 RNASE9P60153 205 aaKnown RBP11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 RAD51AP2Q09MP3 1159 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 UNC5CLQ8IV45 518 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 NT5C1BQ96P26 610 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 DHX36Q9H2U1 1008 aaKnown RBP11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 CHMP2AO43633 222 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 TNNC2P02585 160 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 KRT3P12035 628 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 ATG16L1Q676U5 607 aa11.16□□□□□ -0.62
CCDC88A-202ENST00000336838 MED7O43513 233 aa11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 INHBAP08476 426 aa11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 UNC13DQ70J99 1090 aa11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 AS3MTQ9HBK9 375 aa11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 RASGRF2O14827 1237 aa11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 RNF8O76064 485 aa11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 TPH2Q8IWU9 490 aa11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 TGFBRAP1Q8WUH2 860 aa11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 GFM2Q969S9 779 aaKnown RBP11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 SAP30BPQ9UHR5 308 aaKnown RBP11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 PPP1R9AQ9ULJ8 1098 aa11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 SOWAHDA6NJG2 315 aa11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 DHX9Q08211 1270 aaKnown RBP11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 PLS1Q14651 629 aa11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 PRDM1O75626 825 aa11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 METP08581 1390 aa11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 BIN2Q9UBW5 565 aaPredicted RBP11.15□□□□□ -0.62
CCDC88A-202ENST00000336838 BFSP1Q12934 665 aa11.15□□□□□ -0.63
CCDC88A-202ENST00000336838 BZW1Q7L1Q6 419 aaKnown RBP11.15□□□□□ -0.63
CCDC88A-202ENST00000336838 ANKRD7Q92527 254 aa11.15□□□□□ -0.63
CCDC88A-202ENST00000336838 SEL1LQ9UBV2 794 aa11.15□□□□□ -0.63
CCDC88A-202ENST00000336838 PVALEFA0A1B0GWK0 134 aa11.15□□□□□ -0.63
CCDC88A-202ENST00000336838 TMEM60Q9H2L4 133 aa11.15□□□□□ -0.63
CCDC88A-202ENST00000336838 NDE1Q9NXR1 346 aa11.15□□□□□ -0.63
CCDC88A-202ENST00000336838 WDR17Q8IZU2 1322 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 MYO1CO00159 1063 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 ESRRGP62508 458 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 MUM1L1Q5H9M0 696 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 NRBF2Q96F24 287 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 ERBB3P21860 1342 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 TOB2Q14106 344 aaPredicted RBP11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 DHX40Q8IX18 779 aaKnown RBP11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 CLIC6Q96NY7 704 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 PARVGQ9HBI0 331 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 CCNL1Q9UK58 526 aaPredicted RBP11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 PIK3C2BO00750 1634 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 MCF2LO15068 1137 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 NBPF20Q3BBV1 942 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 SGO2Q562F6 1265 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 HNRNPLLQ8WVV9 542 aaKnown RBP11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 MAGOHBQ96A72 148 aaKnown RBP11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 ACCSQ96QU6 501 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 SYDE1Q6ZW31 735 aaPredicted RBP11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 FBXO11Q86XK2 927 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 TRIM50Q86XT4 487 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 DEPTORQ8TB45 409 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 NLRP7Q8WX94 980 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 DPP8Q6V1X1 898 aaPredicted RBP11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 STK38LQ9Y2H1 464 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 PCDHA1Q9Y5I3 950 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 LIG4P49917 911 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 PLCB4Q15147 1175 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 MB21D1Q8N884 522 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 KANSL2Q9H9L4 492 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 PTPRMP28827 1452 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 ZNF804BA4D1E1 1349 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 DCAF15Q66K64 600 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 ZNF354CQ86Y25 554 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 SLC39A2Q9NP94 309 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 BTG4Q9NY30 223 aa11.14□□□□□ -0.63
CCDC88A-202ENST00000336838 IQANK1A0A1B0GTG1 560 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 F8W031 263 aaPredicted RBP11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 BUB1O43683 1085 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 TADA3O75528 432 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 ABCB4P21439 1286 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 SCP2P22307 547 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 PRR16Q569H4 304 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 CASC4Q6P4E1 433 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 CLEC4GQ6UXB4 293 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 KIRREL3Q8IZU9 778 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 FOXP3Q9BZS1 431 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 KIAA1024Q9UPX6 916 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 DHX34Q14147 1143 aaKnown RBP11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 TTC39CQ8N584 583 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 FAM212AQ96EL1 285 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 USP40Q9NVE5 1235 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 FAM186BQ8IYM0 893 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 CPDO75976 1380 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 MYBL1P10243 752 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 ACTN1P12814 892 aa11.13□□□□□ -0.63
CCDC88A-202ENST00000336838 CYP2J2P51589 502 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms