RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 HEXIM2Q96MH2 286 aaKnown RBP13.68□□□□□ -0.22
SDC3-201ENST00000336798 MIS12Q9H081 205 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 UBE2TQ9NPD8 197 aaPredicted RBP13.68□□□□□ -0.22
SDC3-201ENST00000336798 SLAIN2Q9P270 581 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 PPP1R9AQ9ULJ8 1098 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 RRP15Q9Y3B9 282 aaKnown RBP13.68□□□□□ -0.22
SDC3-201ENST00000336798 F5H423 210 aaPredicted RBP13.68□□□□□ -0.22
SDC3-201ENST00000336798 NOP14P78316 857 aaKnown RBP13.68□□□□□ -0.22
SDC3-201ENST00000336798 NSUN2Q08J23 767 aaKnown RBP eCLIP13.68□□□□□ -0.22
SDC3-201ENST00000336798 SCRN1Q12765 414 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 RWDD4Q6NW29 188 aaKnown RBP13.68□□□□□ -0.22
SDC3-201ENST00000336798 PRPF38AQ8NAV1 312 aaKnown RBP13.68□□□□□ -0.22
SDC3-201ENST00000336798 ZNF274Q96GC6 653 aaPredicted RBP13.68□□□□□ -0.22
SDC3-201ENST00000336798 PRDM5Q9NQX1 630 aaPredicted RBP13.68□□□□□ -0.22
SDC3-201ENST00000336798 SGO2Q562F6 1265 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 FAM133AQ8N9E0 248 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 Q9H521 79 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 ZWILCHQ9H900 591 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 SUCLA2Q9P2R7 463 aaPredicted RBP13.68□□□□□ -0.22
SDC3-201ENST00000336798 ATP8A1Q9Y2Q0 1164 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 PLTPP55058 493 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 ZNF449Q6P9G9 518 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 PDE11AQ9HCR9 933 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 GPATCH8Q9UKJ3 1502 aaKnown RBP13.68□□□□□ -0.22
SDC3-201ENST00000336798 FTCDO95954 541 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 MYL3P08590 195 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 NCF2P19878 526 aaPredicted RBP13.68□□□□□ -0.22
SDC3-201ENST00000336798 FBXW4P57775 412 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 PIGSQ96S52 555 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 TUBGCP2Q9BSJ2 902 aa13.68□□□□□ -0.22
SDC3-201ENST00000336798 PKP1Q13835 747 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 TMEM259Q4ZIN3 620 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 LRRC23Q53EV4 343 aaPredicted RBP13.67□□□□□ -0.22
SDC3-201ENST00000336798 SLC12A6Q9UHW9 1150 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 ADCY9O60503 1353 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 EFCAB8A8MWE9 144 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 MOCS3O95396 460 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 CCND2P30279 289 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 YWHAHQ04917 246 aaPredicted RBP13.67□□□□□ -0.22
SDC3-201ENST00000336798 FAM133BQ5BKY9 247 aaKnown RBP13.67□□□□□ -0.22
SDC3-201ENST00000336798 DEPDC1BQ8WUY9 529 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 RPGRIP1Q96KN7 1286 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 FAM49AQ9H0Q0 323 aaPredicted RBP13.67□□□□□ -0.22
SDC3-201ENST00000336798 JRKLQ9Y4A0 524 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 HOXA13P31271 388 aaPredicted RBP13.67□□□□□ -0.22
SDC3-201ENST00000336798 NLRP4Q96MN2 994 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 ZBED2Q9BTP6 218 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 AMNQ9BXJ7 453 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 LRRC4Q9HBW1 653 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 EPN1Q9Y6I3 576 aaPredicted RBP13.67□□□□□ -0.22
SDC3-201ENST00000336798 ABCA10Q8WWZ4 1543 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 DDAH1O94760 285 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 ANXA13P27216 316 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 PSMC2P35998 433 aaKnown RBP13.67□□□□□ -0.22
SDC3-201ENST00000336798 CRKLP46109 303 aaKnown RBP13.67□□□□□ -0.22
SDC3-201ENST00000336798 RBL2Q08999 1139 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 KRT27Q7Z3Y8 459 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 SEC31BQ9NQW1 1179 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 TLR7Q9NYK1 1049 aaKnown RBP13.67□□□□□ -0.22
SDC3-201ENST00000336798 ORC6Q9Y5N6 252 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 HNRNPCL2B2RXH8 293 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 XPOTO43592 962 aaKnown RBP13.67□□□□□ -0.22
SDC3-201ENST00000336798 HNRNPCL1O60812 293 aaKnown RBP13.67□□□□□ -0.22
SDC3-201ENST00000336798 MSH2P43246 934 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 CCT5P48643 541 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 ANO4Q32M45 955 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 RASIP1Q5U651 963 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 FAM186BQ8IYM0 893 aa13.67□□□□□ -0.22
SDC3-201ENST00000336798 LARP4BQ92615 738 aaKnown RBP13.67□□□□□ -0.22
SDC3-201ENST00000336798 MCF2LO15068 1137 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 SMAD1Q15797 465 aaKnown RBP13.66□□□□□ -0.22
SDC3-201ENST00000336798 TMTC3Q6ZXV5 915 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 SIX6OS1Q8N1H7 587 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 SLC35F6Q8N357 371 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 THOC1Q96FV9 657 aaKnown RBP13.66□□□□□ -0.22
SDC3-201ENST00000336798 INTS9Q9NV88 658 aaKnown RBP13.66□□□□□ -0.22
SDC3-201ENST00000336798 EVI5O60447 810 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 EEF1B2P24534 225 aaKnown RBP13.66□□□□□ -0.22
SDC3-201ENST00000336798 CCNA1P78396 465 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 ERFEQ4G0M1 354 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 QTRT2Q9H974 415 aaKnown RBP13.66□□□□□ -0.22
SDC3-201ENST00000336798 EPB41L5Q9HCM4 733 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 PSDA5PKW4 1024 aaPredicted RBP13.66□□□□□ -0.22
SDC3-201ENST00000336798 PFKFB2O60825 505 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 ARL4AP40617 200 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 AOC3Q16853 763 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 SPATA1Q5VX52 437 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 LRRC8AQ8IWT6 810 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 PIP4K2CQ8TBX8 421 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 ACCSQ96QU6 501 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 ZNF608Q9ULD9 1512 aaPredicted RBP13.66□□□□□ -0.22
SDC3-201ENST00000336798 GSPT1P15170 499 aaKnown RBP13.66□□□□□ -0.22
SDC3-201ENST00000336798 NPR1P16066 1061 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 N4BP2L2Q92802 583 aaPredicted RBP13.66□□□□□ -0.22
SDC3-201ENST00000336798 DYNLL2Q96FJ2 89 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 FAN1Q9Y2M0 1017 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 PRKAB2O43741 272 aa13.66□□□□□ -0.22
SDC3-201ENST00000336798 AFPP02771 609 aaKnown RBP13.66□□□□□ -0.22
SDC3-201ENST00000336798 PDIA3P30101 505 aaKnown RBP13.66□□□□□ -0.22
SDC3-201ENST00000336798 IL9RQ01113 521 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms