RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 SPRED3Q2MJR0 410 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 USP17L1Q7RTZ2 530 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 ZKSCAN4Q969J2 545 aaPredicted RBP8.68□□□□□ -1.02
VMA21-201ENST00000330374 ATP6V1G3Q96LB4 118 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 MCM9Q9NXL9 1143 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 KLRC1P26715 233 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 RCAN1P53805 252 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 IQCKQ8N0W5 287 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 CDK5RAP3Q96JB5 506 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 RIOK1Q9BRS2 568 aaKnown RBP8.68□□□□□ -1.02
VMA21-201ENST00000330374 SLC40A1Q9NP59 571 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 ADAMTS1Q9UHI8 967 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 PCDHA6Q9UN73 950 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 PCDHA8Q9Y5H6 950 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 TMCO5BA8MYB1 307 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 CEP104O60308 925 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 USP17L8P0C7I0 530 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 NF2P35240 595 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 KIAA0753Q2KHM9 967 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 KDM7AQ6ZMT4 941 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 NELFCDQ8IXH7 590 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 BANK1Q8NDB2 785 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 PIK3R5Q8WYR1 880 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 CAVIN3Q969G5 261 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 TBC1D31Q96DN5 1066 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 TMX4Q9H1E5 349 aaPredicted RBP8.68□□□□□ -1.02
VMA21-201ENST00000330374 ZHX3Q9H4I2 956 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 TFCP2L1Q9NZI6 479 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 BCL9LQ86UU0 1499 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 LRP6O75581 1613 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 PHRF1Q9P1Y6 1649 aaKnown RBP8.68□□□□□ -1.02
VMA21-201ENST00000330374 NUP188Q5SRE5 1749 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 CTNNA1P35221 906 aaKnown RBP8.68□□□□□ -1.02
VMA21-201ENST00000330374 CACNB1Q02641 598 aaPredicted RBP8.68□□□□□ -1.02
VMA21-201ENST00000330374 QPCTQ16769 361 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 TAF4BQ92750 862 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 CYFIP2Q96F07 1278 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 ERGIC2Q96RQ1 377 aa8.68□□□□□ -1.02
VMA21-201ENST00000330374 GCOM1H8Y6P7 765 aaPredicted RBP8.67□□□□□ -1.02
VMA21-201ENST00000330374 OPLAHO14841 1288 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 MYZAPP0CAP1 466 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 EPB41P11171 864 aaKnown RBP8.67□□□□□ -1.02
VMA21-201ENST00000330374 KIF5BP33176 963 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 NAPAP54920 295 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 MARSP56192 900 aaKnown RBP8.67□□□□□ -1.02
VMA21-201ENST00000330374 ADAT2Q7Z6V5 191 aaKnown RBP8.67□□□□□ -1.02
VMA21-201ENST00000330374 GJA10Q969M2 543 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 SLC4A9Q96Q91 983 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 LSM14BQ9BX40 385 aaKnown RBP8.67□□□□□ -1.02
VMA21-201ENST00000330374 PHF20L1A8MW92 1017 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 TRAF5O00463 557 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 GSCP56915 257 aaPredicted RBP8.67□□□□□ -1.02
VMA21-201ENST00000330374 BICDL1Q6ZP65 573 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 FAM133AQ8N9E0 248 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 DPH5Q9H2P9 285 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 NOVA2Q9UNW9 492 aaKnown RBP8.67□□□□□ -1.02
VMA21-201ENST00000330374 SIK3Q9Y2K2 1263 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 FSBPO95073 299 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 CHADLQ6NUI6 762 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 CNNM4Q6P4Q7 775 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 CCDC24Q8N4L8 307 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 SLC44A5Q8NCS7 719 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 DDX47Q9H0S4 455 aaKnown RBP8.67□□□□□ -1.02
VMA21-201ENST00000330374 ODF2LQ9ULJ1 636 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 KCPQ6ZWJ8 1503 aa8.67□□□□□ -1.02
VMA21-201ENST00000330374 DCDC2CA8MYV0 355 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 CHUKO15111 745 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 PDE6BP35913 854 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 ZNF662Q6ZS27 426 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 CPLX4Q7Z7G2 160 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 MDM1Q8TC05 714 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 MKNK2Q9HBH9 465 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 PPP1R12BO60237 982 aaPredicted RBP8.66□□□□□ -1.02
VMA21-201ENST00000330374 OR52Z1P0C646 297 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 TCF3P15923 654 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 KLRK1P26718 216 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 MAN2A1Q16706 1144 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 SLC9C1Q4G0N8 1177 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 CCDC152Q4G0S7 254 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 TEX2Q8IWB9 1127 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 ZNF384Q8TF68 577 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 CALML4Q96GE6 196 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 VCPKMTQ9H867 229 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 GPCPD1Q9NPB8 672 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 TMA7Q9Y2S6 64 aaKnown RBP8.66□□□□□ -1.02
VMA21-201ENST00000330374 TLDC2A0PJX2 215 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 MYMKA6NI61 221 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 FAM107AO95990 144 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 FLT3P36888 993 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 HSD17B3P37058 310 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 EPS15P42566 896 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 ERVK-9P63128 1117 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 DIXDC1Q155Q3 683 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 SFMBT2Q5VUG0 894 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 PDXDC1Q6P996 788 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 SV2BQ7L1I2 683 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 UHMK1Q8TAS1 419 aaKnown RBP8.66□□□□□ -1.02
VMA21-201ENST00000330374 MTA3Q9BTC8 594 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 GDF3Q9NR23 364 aa8.66□□□□□ -1.02
VMA21-201ENST00000330374 DDX20Q9UHI6 824 aaKnown RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms