RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 OSBPL9Q96SU4 736 aa15.39■□□□□ 0.06
COL7A1-201ENST00000328333 SUCLA2Q9P2R7 463 aaPredicted RBP15.39■□□□□ 0.06
COL7A1-201ENST00000328333 ZNF518AQ6AHZ1 1483 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 TMED10P49755 219 aaKnown RBP15.39■□□□□ 0.05
COL7A1-201ENST00000328333 ZBTB8OSQ8IWT0 167 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 RHOT2Q8IXI1 618 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 DCAF5Q96JK2 942 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 MED7O43513 233 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 CEP55Q53EZ4 464 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 OTUB1Q96FW1 271 aaPredicted RBP15.39■□□□□ 0.05
COL7A1-201ENST00000328333 EYA2O00167 538 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 NUDCD1Q96RS6 583 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 PDE4DIPQ5VU43 2346 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 MIF4GDA9UHW6 222 aaKnown RBP15.39■□□□□ 0.05
COL7A1-201ENST00000328333 BIRC2Q13490 618 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 TEX2Q8IWB9 1127 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 SKOR1P84550 965 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 LRRC63Q05C16 580 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 RASSF7Q02833 373 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 MED21Q13503 144 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 DYDC2Q96IM9 177 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 ZC3H12CQ9C0D7 883 aaKnown RBP15.39■□□□□ 0.05
COL7A1-201ENST00000328333 POC1B-GALNT4F8VUJ3 575 aa15.39■□□□□ 0.05
COL7A1-201ENST00000328333 MAN2A1Q16706 1144 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 FBXO38Q6PIJ6 1188 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 ARHGEF25Q86VW2 580 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 ASPSCR1Q9BZE9 553 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 MICAL3Q7RTP6 2002 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 CASP14P31944 242 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 FKBP3Q00688 224 aaKnown RBP15.38■□□□□ 0.05
COL7A1-201ENST00000328333 UIMC1Q96RL1 719 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 MOV10L1Q9BXT6 1211 aaKnown RBP15.38■□□□□ 0.05
COL7A1-201ENST00000328333 DPH5Q9H2P9 285 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 GCNT4Q9P109 453 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 BUB1O43683 1085 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 OCRLQ01968 901 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 POTEAQ6S8J7 498 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 USHBP1Q8N6Y0 703 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 CYLC2Q14093 348 aaPredicted RBP15.38■□□□□ 0.05
COL7A1-201ENST00000328333 VSTM4Q8IW00 320 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 TRMT44Q8IYL2 757 aaKnown RBP15.38■□□□□ 0.05
COL7A1-201ENST00000328333 CNOT6LQ96LI5 555 aaKnown RBP15.38■□□□□ 0.05
COL7A1-201ENST00000328333 PARD6BQ9BYG5 372 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 RNF123Q5XPI4 1314 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 ZBED6P86452 979 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 GPT2Q8TD30 523 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 NCOA5Q9HCD5 579 aaKnown RBP15.38■□□□□ 0.05
COL7A1-201ENST00000328333 KLC4Q9NSK0 619 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 SESN1Q9Y6P5 492 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 ANO9A1A5B4 782 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 CA4P22748 312 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 TBCCQ15814 346 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 GNPTABQ3T906 1256 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 TRIM45Q9H8W5 580 aaPredicted RBP15.38■□□□□ 0.05
COL7A1-201ENST00000328333 ARHGEF37A1IGU5 675 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 PYGMP11217 842 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 RXRAP19793 462 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 KLC1Q07866 573 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 BLIDQ8IZY5 108 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 C19orf44Q9H6X5 657 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 VIPAS39Q9H9C1 493 aa15.38■□□□□ 0.05
COL7A1-201ENST00000328333 NPR1P16066 1061 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 MRPS35P82673 323 aaKnown RBP15.37■□□□□ 0.05
COL7A1-201ENST00000328333 MYL7Q01449 175 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 PSMD2Q13200 908 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 MAPRE2Q15555 327 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 ST7Q9NRC1 585 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 PIK3CAP42336 1068 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 SLC35F6Q8N357 371 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 DACH2Q96NX9 599 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 GID8Q9NWU2 228 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 ARHGEF10O15013 1369 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 CCDC22O60826 627 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 SERPING1P05155 500 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 ADAM9Q13443 819 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 C8orf58Q8NAV2 365 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 THAP9Q9H5L6 903 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 SMYD2Q9NRG4 433 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 CDH2P19022 906 aaPredicted RBP15.37■□□□□ 0.05
COL7A1-201ENST00000328333 SMARCA1P28370 1054 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 NAF1Q96HR8 494 aaKnown RBP15.37■□□□□ 0.05
COL7A1-201ENST00000328333 L3MBTL1Q9Y468 752 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 ZBTB7BO15156 539 aaPredicted RBP15.37■□□□□ 0.05
COL7A1-201ENST00000328333 ATP2B4P23634 1241 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 KLHL38Q2WGJ6 581 aa15.37■□□□□ 0.05
COL7A1-201ENST00000328333 METTL22Q9BUU2 404 aaPredicted RBP15.37■□□□□ 0.05
COL7A1-201ENST00000328333 CHCHD3Q9NX63 227 aaKnown RBP15.37■□□□□ 0.05
COL7A1-201ENST00000328333 GOLGA8IPA6NC78 632 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 PLTPP55058 493 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 EPM2AIP1Q7L775 607 aaPredicted RBP15.36■□□□□ 0.05
COL7A1-201ENST00000328333 CD109Q6YHK3 1445 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 TJP3O95049 919 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 ME3Q16798 604 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.36■□□□□ 0.05
COL7A1-201ENST00000328333 GMNCA6NCL1 334 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 KRT19P08727 400 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 ATP5JP18859 108 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 E7EWF7 191 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 OSBPL1AQ9BXW6 950 aa15.36■□□□□ 0.05
COL7A1-201ENST00000328333 GPHNQ9NQX3 736 aaPredicted RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms