RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 KRT38O76015 456 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 TTLL1O95922 423 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 KRT14P02533 472 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 KLHL30Q0D2K2 578 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 CAPRIN1Q14444 709 aaKnown RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 ANGPTL2Q9UKU9 493 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 GTPBP10A4D1E9 387 aaKnown RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 ZBED6P86452 979 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 PURAQ00577 322 aaKnown RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 FSCBQ5H9T9 825 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 ZNF662Q6ZS27 426 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 VPS37AQ8NEZ2 397 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 SGSM3Q96HU1 749 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 PHF23Q9BUL5 403 aaPredicted RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 UPF3AQ9H1J1 476 aaKnown RBP4.36□□□□□ -1.71
USH2A-201ENST00000307340 DNAJC25Q9H1X3 360 aa4.36□□□□□ -1.71
USH2A-201ENST00000307340 FAM177BA6PVY3 158 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 SLFN14P0C7P3 912 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 CNTFP26441 200 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 CCDC15Q0P6D6 951 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 MAPRE2Q15555 327 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 CEP85LQ5SZL2 805 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 RBM41Q96IZ5 413 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 TRIM45Q9H8W5 580 aaPredicted RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 SLC12A6Q9UHW9 1150 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 SLC4A4Q9Y6R1 1079 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 TMED1Q13445 227 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 EFL1Q7Z2Z2 1120 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 PICK1Q9NRD5 415 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 SLC20A2Q08357 652 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 RDM1Q8NG50 284 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 AATFQ9NY61 560 aaKnown RBP eCLIP4.35□□□□□ -1.71
USH2A-201ENST00000307340 SRPRBQ9Y5M8 271 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 OAS2P29728 719 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 HOXC8P31273 242 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 MAPK9P45984 424 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 BAG5Q9UL15 447 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 H3BQF6 201 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 KRT9P35527 623 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 KIF23Q02241 960 aaPredicted RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 DYNC1I2Q13409 638 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 ASIC2Q16515 512 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 CXorf38Q8TB03 319 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 TTC17Q96AE7 1141 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 KDM4CQ9H3R0 1056 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 PNMA3Q9UL41 463 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 EIF4A2Q14240 407 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 BRF1Q92994 677 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 MAGEB10Q96LZ2 347 aaPredicted RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 LRRIQ3A6PVS8 624 aaPredicted RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 PDIA5Q14554 519 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 OTUD7BQ6GQQ9 843 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 ZMAT2Q96NC0 199 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 KANSL2Q9H9L4 492 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 PVALEFA0A1B0GWK0 134 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 CTNNA1P35221 906 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 CEBPZQ03701 1054 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 MAN2A1Q16706 1144 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 ZSCAN10Q96SZ4 725 aaPredicted RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 MTMR12Q9C0I1 747 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 SLC27A2O14975 620 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 PSMC2P35998 433 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 MYBPC2Q14324 1141 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 GCKRQ14397 625 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 MFSD4BQ5TF39 518 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 TBC1D9BQ66K14 1250 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 RSPH3Q86UC2 560 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 ERICH1Q86X53 443 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 MKNK1Q9BUB5 465 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 CCDC28BQ9BUN5 200 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 CAPS2Q9BXY5 557 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 XDHP47989 1333 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 MYO1FO00160 1098 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 MAPK13O15264 365 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 SERPING1P05155 500 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 PRIM1P49642 420 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 CCDC13Q8IYE1 715 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 FAM204AQ9H8W3 233 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 IL1RAPL1Q9NZN1 696 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 WDR35Q9P2L0 1181 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 ZEB2O60315 1214 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 HIBADHP31937 336 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 JAK3P52333 1124 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 CTSWP56202 376 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 CENPUQ71F23 418 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 WDR75Q8IWA0 830 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 CALML6Q8TD86 181 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 BSNDQ8WZ55 320 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 GOLPH3LQ9H4A5 285 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 ADCY7P51828 1080 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 CYTH1Q15438 398 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 NAALADL2Q58DX5 795 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 MOXD1Q6UVY6 613 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 DZIP3Q86Y13 1208 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 OSBPL5Q9H0X9 879 aaPredicted RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 WNT8AQ9H1J5 351 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 LOC102724159A0A0B4J2E5 919 aa4.35□□□□□ -1.71
USH2A-201ENST00000307340 RNMTO43148 476 aaKnown RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 HOXB8P17481 243 aaPredicted RBP4.35□□□□□ -1.71
USH2A-201ENST00000307340 MFAP3P55082 362 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms