RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 PNMA8AQ86V59 439 aaPredicted RBP13.92□□□□□ -0.18
PTCD1-201ENST00000292478 FTOQ9C0B1 505 aaKnown RBP eCLIP13.92□□□□□ -0.18
PTCD1-201ENST00000292478 PARVGQ9HBI0 331 aa13.92□□□□□ -0.18
PTCD1-201ENST00000292478 ECM2O94769 699 aaPredicted RBP13.92□□□□□ -0.18
PTCD1-201ENST00000292478 KMT5BQ4FZB7 885 aa13.92□□□□□ -0.18
PTCD1-201ENST00000292478 CALR3Q96L12 384 aaKnown RBP13.92□□□□□ -0.18
PTCD1-201ENST00000292478 TLR3O15455 904 aaKnown RBP13.92□□□□□ -0.18
PTCD1-201ENST00000292478 SH3BP5O60239 455 aa13.92□□□□□ -0.18
PTCD1-201ENST00000292478 TCP11X2Q5H9J9 407 aa13.92□□□□□ -0.18
PTCD1-201ENST00000292478 ZNF772Q68DY9 489 aaPredicted RBP13.92□□□□□ -0.18
PTCD1-201ENST00000292478 CCHCR1Q8TD31 782 aa13.92□□□□□ -0.18
PTCD1-201ENST00000292478 ZNF148Q9UQR1 794 aa13.92□□□□□ -0.18
PTCD1-201ENST00000292478 PCDHB4Q9Y5E5 795 aa13.92□□□□□ -0.18
PTCD1-201ENST00000292478 MRPL47Q9HD33 250 aaKnown RBP13.91□□□□□ -0.18
PTCD1-201ENST00000292478 SAMSN1Q9NSI8 373 aaKnown RBP13.91□□□□□ -0.18
PTCD1-201ENST00000292478 OSBPP22059 807 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 CNGA1P29973 690 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 GABPAQ06546 454 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 TMEM179Q6ZVK1 233 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 SMYD4Q8IYR2 804 aaPredicted RBP13.91□□□□□ -0.18
PTCD1-201ENST00000292478 COA7Q96BR5 231 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 QRICH2Q9H0J4 1663 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 GARSP41250 739 aaKnown RBP13.91□□□□□ -0.18
PTCD1-201ENST00000292478 CCDC93Q567U6 631 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 USP17L2Q6R6M4 530 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 RNF10Q8N5U6 811 aaKnown RBP13.91□□□□□ -0.18
PTCD1-201ENST00000292478 NHEJ1Q9H9Q4 299 aaPredicted RBP13.91□□□□□ -0.18
PTCD1-201ENST00000292478 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.91□□□□□ -0.18
PTCD1-201ENST00000292478 CCDC151A5D8V7 595 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 USP17L3A6NCW0 530 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 USP17L4A6NCW7 530 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 PFKFB3Q16875 520 aaPredicted RBP13.91□□□□□ -0.18
PTCD1-201ENST00000292478 TSGA10IPQ3SY00 556 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 USP17L1Q7RTZ2 530 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 CDKL2Q92772 493 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 RILPQ96NA2 401 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 MXD3Q9BW11 206 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 DAAM1Q9Y4D1 1078 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 BCORL1Q5H9F3 1711 aa13.91□□□□□ -0.18
PTCD1-201ENST00000292478 NDUFA10O95299 355 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 GRAMD1CQ8IYS0 662 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 MAGOHBQ96A72 148 aaKnown RBP13.9□□□□□ -0.18
PTCD1-201ENST00000292478 NDST4Q9H3R1 872 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 SPTLC3Q9NUV7 552 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 ANKFY1Q9P2R3 1169 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 USH1CQ9Y6N9 552 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 PFDN6O15212 129 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 MESDQ14696 234 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 CLEC17AQ6ZS10 378 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 MB21D1Q8N884 522 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 MGARPQ8TDB4 240 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 DYNLL2Q96FJ2 89 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 PFDN4Q9NQP4 134 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 NRKQ7Z2Y5 1582 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 MED7O43513 233 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 MAPK4P31152 587 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 PPP2R5DQ14738 602 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 LRRC41Q15345 812 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 EPHA10Q5JZY3 1008 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 TACC3Q9Y6A5 838 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 LMTK2Q8IWU2 1503 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 A6NJR5 290 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 SLC16A2P36021 539 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 UNC13DQ70J99 1090 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 RTKN2Q8IZC4 609 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 ANKRD13CQ8N6S4 541 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 ZNF653Q96CK0 615 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 ANO3Q9BYT9 981 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 DIS3Q9Y2L1 958 aaKnown RBP13.9□□□□□ -0.18
PTCD1-201ENST00000292478 REREQ9P2R6 1566 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 BRINP3Q76B58 766 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 MB21D2Q8IYB1 491 aaPredicted RBP13.9□□□□□ -0.18
PTCD1-201ENST00000292478 ISCA1Q9BUE6 129 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 PDE11AQ9HCR9 933 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 NARFQ9UHQ1 456 aa13.9□□□□□ -0.18
PTCD1-201ENST00000292478 PSAPP07602 524 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 SPICE1Q8N0Z3 855 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 PROM2Q8N271 834 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 BCAS4Q8TDM0 211 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 GCNT4Q9P109 453 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 CYP2E1P05181 493 aaPredicted RBP13.89□□□□□ -0.19
PTCD1-201ENST00000292478 CEP170P1Q96L14 293 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 RABEP2Q9H5N1 569 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 PCDHA13Q9Y5I0 950 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 CLRN2A0PK11 232 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 GDF11O95390 407 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 ADRA2BP18089 450 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 KRT27Q7Z3Y8 459 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 MASTLQ96GX5 879 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 EPSTI1Q96J88 318 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 PLEKHA4Q9H4M7 779 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 DBNDD1Q9H9R9 158 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 MFAP3LO75121 409 aa13.89□□□□□ -0.19
PTCD1-201ENST00000292478 HEXIM1O94992 359 aaKnown RBP13.89□□□□□ -0.19
PTCD1-201ENST00000292478 EIF4A3P38919 411 aaKnown RBP13.88□□□□□ -0.19
PTCD1-201ENST00000292478 TRIM42Q8IWZ5 723 aa13.88□□□□□ -0.19
PTCD1-201ENST00000292478 TNS3Q68CZ2 1445 aa13.88□□□□□ -0.19
PTCD1-201ENST00000292478 LRRC7Q96NW7 1537 aa13.88□□□□□ -0.19
PTCD1-201ENST00000292478 LPXNO60711 386 aa13.88□□□□□ -0.19
PTCD1-201ENST00000292478 IL9RQ01113 521 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms