RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 ATG4CQ96DT6 458 aa5.56□□□□□ -1.52
CD44-202ENST00000278385 MFSD3Q96ES6 412 aa5.56□□□□□ -1.52
CD44-202ENST00000278385 KREMEN1Q96MU8 473 aa5.56□□□□□ -1.52
CD44-202ENST00000278385 TM9SF2Q99805 663 aa5.56□□□□□ -1.52
CD44-202ENST00000278385 SRRTQ9BXP5 876 aaKnown RBP5.56□□□□□ -1.52
CD44-202ENST00000278385 MKRN2Q9H000 416 aaKnown RBP5.56□□□□□ -1.52
CD44-202ENST00000278385 CNNM2Q9H8M5 875 aa5.56□□□□□ -1.52
CD44-202ENST00000278385 NGRNQ9NPE2 291 aaKnown RBP5.56□□□□□ -1.52
CD44-202ENST00000278385 LUZP4Q9P127 313 aa5.56□□□□□ -1.52
CD44-202ENST00000278385 ZSWIM5Q9P217 1185 aa5.56□□□□□ -1.52
CD44-202ENST00000278385 POLG2Q9UHN1 485 aa5.56□□□□□ -1.52
CD44-202ENST00000278385 ASAP1Q9ULH1 1129 aa5.56□□□□□ -1.52
CD44-202ENST00000278385 ZNRF3Q9ULT6 936 aa5.56□□□□□ -1.52
CD44-202ENST00000278385 NUB1Q9Y5A7 615 aa5.56□□□□□ -1.52
CD44-202ENST00000278385 PTCH2Q9Y6C5 1203 aa5.56□□□□□ -1.52
CD44-202ENST00000278385 EFCAB6Q5THR3 1501 aa5.56□□□□□ -1.52
CD44-202ENST00000278385 A0A087X0B3 334 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 GOLGA6CA6NDK9 693 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 GOLGA6BA6NDN3 693 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 H3BS24 57 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 DHX16O60231 1041 aaKnown RBP5.55□□□□□ -1.52
CD44-202ENST00000278385 HIP1RO75146 1068 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 GOLGA6DP0CG33 693 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 POLD1P28340 1107 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 BNIP3Q12983 259 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 GFOD2Q3B7J2 385 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 BBS9Q3SYG4 887 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 CT47A1Q5JQC4 288 aaPredicted RBP5.55□□□□□ -1.52
CD44-202ENST00000278385 FAM102BQ5T8I3 360 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 INTS3Q68E01 1043 aaKnown RBP5.55□□□□□ -1.52
CD44-202ENST00000278385 CC2D1AQ6P1N0 951 aaPredicted RBP5.55□□□□□ -1.52
CD44-202ENST00000278385 FAM214BQ7L5A3 538 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 TMPRSS7Q7RTY8 843 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 SPACA3Q8IXA5 215 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 CPXCR1Q8N123 301 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 TTC30BQ8N4P2 665 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 DNAJB8Q8NHS0 232 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 NINJ1Q92982 152 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 UBE2FQ969M7 185 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 ERP27Q96DN0 273 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 HSPA12BQ96MM6 686 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 CAMKK2Q96RR4 588 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 TNKS2Q9H2K2 1166 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 GOLGA6AQ9NYA3 693 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 CLIC5Q9NZA1 410 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 GTF2A1LQ9UNN4 478 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 DAAM1Q9Y4D1 1078 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 CTDP1Q9Y5B0 961 aaPredicted RBP5.55□□□□□ -1.52
CD44-202ENST00000278385 CAPN6Q9Y6Q1 641 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 NAIPQ13075 1403 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 RIMS2Q9UQ26 1411 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 PLEKHG1Q9ULL1 1385 aa5.55□□□□□ -1.52
CD44-202ENST00000278385 E2F8A0AVK6 867 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 KATNA1O75449 491 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 TRIM27P14373 513 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 NME1P15531 152 aaKnown RBP5.54□□□□□ -1.52
CD44-202ENST00000278385 HSPA1LP34931 641 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 TERF1P54274 439 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 ZP2Q05996 745 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 PIN1Q13526 163 aaPredicted RBP5.54□□□□□ -1.52
CD44-202ENST00000278385 C21orf62-AS1Q17RA5 79 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 LONRF1Q17RB8 773 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 NKPD1Q17RQ9 610 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 KRT77Q7Z794 578 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 RNF180Q86T96 592 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 SUGP1Q8IWZ8 645 aaKnown RBP5.54□□□□□ -1.52
CD44-202ENST00000278385 NIM1KQ8IY84 436 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 MAGEB6Q8N7X4 407 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 ENAHQ8N8S7 591 aaPredicted RBP5.54□□□□□ -1.52
CD44-202ENST00000278385 ANKRD42Q8N9B4 389 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 SHDQ96IW2 340 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 TSPAN18Q96SJ8 248 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 RTFDC1Q9BY42 306 aaPredicted RBP5.54□□□□□ -1.52
CD44-202ENST00000278385 ST7Q9NRC1 585 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 LMCD1Q9NZU5 365 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 FBXL21Q9UKT6 434 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 NAP1L2Q9ULW6 460 aaPredicted RBP5.54□□□□□ -1.52
CD44-202ENST00000278385 PPT2Q9UMR5 302 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 PLAGL2Q9UPG8 496 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 CEP152O94986 1710 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 DISP3Q9P2K9 1392 aa5.54□□□□□ -1.52
CD44-202ENST00000278385 LRRC7Q96NW7 1537 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 MEIS3P2A8K0S8 358 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 CD8BP10966 210 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 TPP2P29144 1249 aaPredicted RBP5.53□□□□□ -1.52
CD44-202ENST00000278385 SARSP49591 514 aaKnown RBP5.53□□□□□ -1.52
CD44-202ENST00000278385 PPM1FP49593 454 aaPredicted RBP5.53□□□□□ -1.52
CD44-202ENST00000278385 GEMIN4P57678 1058 aaKnown RBP5.53□□□□□ -1.52
CD44-202ENST00000278385 TNK2Q07912 1038 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 PPP2R5EQ16537 467 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 SLC4A8Q2Y0W8 1093 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 MTERF2Q49AM1 385 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 HYIQ5T013 277 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 C1QTNF12Q5T7M4 302 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 ANO1Q5XXA6 986 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 IL31Q6EBC2 164 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 SLC23A3Q6PIS1 610 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 CASC1Q6TDU7 716 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 CCDC144CPQ8IYA2 1237 aa5.53□□□□□ -1.52
CD44-202ENST00000278385 PPHLN1Q8NEY8 458 aaKnown RBP5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms