RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 RBM28Q9NW13 759 aaKnown RBP16.63■□□□□ 0.25
HMGN3-201ENST00000275036 GOLGA8AA7E2F4 631 aa16.62■□□□□ 0.25
HMGN3-201ENST00000275036 GOLGA8BA8MQT2 603 aa16.62■□□□□ 0.25
HMGN3-201ENST00000275036 KPNA6O60684 536 aa16.62■□□□□ 0.25
HMGN3-201ENST00000275036 UBA1P22314 1058 aaKnown RBP16.62■□□□□ 0.25
HMGN3-201ENST00000275036 CHMP4BP1P59074 171 aa16.62■□□□□ 0.25
HMGN3-201ENST00000275036 SEMA3FQ13275 785 aa16.62■□□□□ 0.25
HMGN3-201ENST00000275036 MYSM1Q5VVJ2 828 aa16.62■□□□□ 0.25
HMGN3-201ENST00000275036 WWC2Q6AWC2 1192 aa16.62■□□□□ 0.25
HMGN3-201ENST00000275036 TYW1BQ6NUM6 668 aa16.62■□□□□ 0.25
HMGN3-201ENST00000275036 BLOC1S2Q6QNY1 142 aa16.62■□□□□ 0.25
HMGN3-201ENST00000275036 SMARCC2Q8TAQ2 1214 aa16.62■□□□□ 0.25
HMGN3-201ENST00000275036 HERVK_113Q902F9 699 aa16.62■□□□□ 0.25
HMGN3-201ENST00000275036 CDX2Q99626 313 aaPredicted RBP16.62■□□□□ 0.25
HMGN3-201ENST00000275036 USP26Q9BXU7 913 aa16.62■□□□□ 0.25
HMGN3-201ENST00000275036 TET1Q8NFU7 2136 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 UNC80Q8N2C7 3258 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.61■□□□□ 0.25
HMGN3-201ENST00000275036 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.61■□□□□ 0.25
HMGN3-201ENST00000275036 CENPBP07199 599 aaPredicted RBP16.61■□□□□ 0.25
HMGN3-201ENST00000275036 ZNF286BP0CG31 522 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 HOXD8P13378 290 aaPredicted RBP16.61■□□□□ 0.25
HMGN3-201ENST00000275036 RPS6KB1P23443 525 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 DNAJB2P25686 324 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 UBE2SQ16763 222 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 HSDL1Q3SXM5 330 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 GDF6Q6KF10 455 aaPredicted RBP16.61■□□□□ 0.25
HMGN3-201ENST00000275036 OTOP2Q7RTS6 562 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 HEATR3Q7Z4Q2 680 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 PPTC7Q8NI37 304 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 DHX38Q92620 1227 aaKnown RBP16.61■□□□□ 0.25
HMGN3-201ENST00000275036 BRF1Q92994 677 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 CUL5Q93034 780 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 PBX4Q9BYU1 374 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 AGXT2Q9BYV1 514 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 PSTPIP2Q9H939 334 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 TELO2Q9Y4R8 837 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 CHD9Q3L8U1 2897 aa16.61■□□□□ 0.25
HMGN3-201ENST00000275036 EPB41L2O43491 1005 aaKnown RBP16.6■□□□□ 0.25
HMGN3-201ENST00000275036 GGPS1O95749 300 aa16.6■□□□□ 0.25
HMGN3-201ENST00000275036 F2P00734 622 aa16.6■□□□□ 0.25
HMGN3-201ENST00000275036 SUPT20HL2P0C7V6 817 aa16.6■□□□□ 0.25
HMGN3-201ENST00000275036 CASTP20810 708 aaKnown RBP16.6■□□□□ 0.25
HMGN3-201ENST00000275036 ADD1P35611 737 aaKnown RBP16.6■□□□□ 0.25
HMGN3-201ENST00000275036 RCAN1P53805 252 aa16.6■□□□□ 0.25
HMGN3-201ENST00000275036 PTPN11Q06124 597 aaPredicted RBP16.6■□□□□ 0.25
HMGN3-201ENST00000275036 LAMC2Q13753 1193 aa16.6■□□□□ 0.25
HMGN3-201ENST00000275036 HIC1Q14526 733 aa16.6■□□□□ 0.25
HMGN3-201ENST00000275036 DGKDQ16760 1214 aa16.6■□□□□ 0.25
HMGN3-201ENST00000275036 CELF3Q5SZQ8 465 aaKnown RBP16.6■□□□□ 0.25
HMGN3-201ENST00000275036 KCNV1Q6PIU1 500 aa16.6■□□□□ 0.25
HMGN3-201ENST00000275036 SESTD1Q86VW0 696 aa16.6■□□□□ 0.25
HMGN3-201ENST00000275036 DHX37Q8IY37 1157 aaKnown RBP16.6■□□□□ 0.25
HMGN3-201ENST00000275036 FBXL16Q8N461 479 aa16.6■□□□□ 0.25
HMGN3-201ENST00000275036 MYLIPQ8WY64 445 aa16.6■□□□□ 0.25
HMGN3-201ENST00000275036 INPP4AQ96PE3 977 aaPredicted RBP16.6■□□□□ 0.25
HMGN3-201ENST00000275036 RTEL1Q9NZ71 1219 aa16.6■□□□□ 0.25
HMGN3-201ENST00000275036 V9GY48 417 aaPredicted RBP16.6■□□□□ 0.25
HMGN3-201ENST00000275036 HAS3O00219 553 aa16.59■□□□□ 0.25
HMGN3-201ENST00000275036 FGBP02675 491 aa16.59■□□□□ 0.25
HMGN3-201ENST00000275036 ICAM3P32942 547 aa16.59■□□□□ 0.25
HMGN3-201ENST00000275036 PSEN2P49810 448 aa16.59■□□□□ 0.25
HMGN3-201ENST00000275036 FGD1P98174 961 aa16.59■□□□□ 0.25
HMGN3-201ENST00000275036 GRIN2CQ14957 1233 aa16.59■□□□□ 0.25
HMGN3-201ENST00000275036 PCNX4Q63HM2 1172 aa16.59■□□□□ 0.25
HMGN3-201ENST00000275036 ALG1Q9BT22 464 aa16.59■□□□□ 0.25
HMGN3-201ENST00000275036 HDAC6Q9UBN7 1215 aa16.59■□□□□ 0.25
HMGN3-201ENST00000275036 NAP1L2Q9ULW6 460 aaPredicted RBP16.59■□□□□ 0.25
HMGN3-201ENST00000275036 NID2Q14112 1375 aa16.59■□□□□ 0.25
HMGN3-201ENST00000275036 MYO9BQ13459 2157 aa16.58■□□□□ 0.25
HMGN3-201ENST00000275036 SPATA31C2B4DYI2 1134 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 STXBP3O00186 592 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 TGFB3P10600 412 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 PSMA5P28066 241 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 METAP2P50579 478 aaKnown RBP eCLIP16.58■□□□□ 0.24
HMGN3-201ENST00000275036 MFSD10Q14728 455 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 GPNMBQ14956 572 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 PTGISQ16647 500 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 DEFB128Q7Z7B8 93 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 SLC17A8Q8NDX2 589 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 WNT8BQ93098 351 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 TIFAQ96CG3 184 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 SPATA33Q96N06 139 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 C16orf70Q9BSU1 422 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 ZSWIM6Q9HCJ5 1215 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 GTF2IRD1Q9UHL9 959 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 KAT6AQ92794 2004 aa16.58■□□□□ 0.24
HMGN3-201ENST00000275036 CHD7Q9P2D1 2997 aa16.57■□□□□ 0.24
HMGN3-201ENST00000275036 TMEM265A0A087WTH1 108 aa16.57■□□□□ 0.24
HMGN3-201ENST00000275036 PITPNM1O00562 1244 aa16.57■□□□□ 0.24
HMGN3-201ENST00000275036 STAM2O75886 525 aa16.57■□□□□ 0.24
HMGN3-201ENST00000275036 IQCF3P0C7M6 154 aa16.57■□□□□ 0.24
HMGN3-201ENST00000275036 NAPAP54920 295 aa16.57■□□□□ 0.24
HMGN3-201ENST00000275036 ZNF200P98182 395 aaPredicted RBP16.57■□□□□ 0.24
HMGN3-201ENST00000275036 TOB2Q14106 344 aaPredicted RBP16.57■□□□□ 0.24
HMGN3-201ENST00000275036 KIAA0753Q2KHM9 967 aa16.57■□□□□ 0.24
HMGN3-201ENST00000275036 RUFY3Q7L099 469 aa16.57■□□□□ 0.24
HMGN3-201ENST00000275036 PCDHA6Q9UN73 950 aa16.57■□□□□ 0.24
HMGN3-201ENST00000275036 YBX2Q9Y2T7 364 aaKnown RBP16.57■□□□□ 0.24
HMGN3-201ENST00000275036 PCDHA8Q9Y5H6 950 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms