RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 VCAM1P19320 739 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 CCNE1P24864 410 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 RPA1P27694 616 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 HSD17B4P51659 736 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 BACE1P56817 501 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 STK4Q13043 487 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 SPP2Q13103 211 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 TBX2Q13207 712 aaPredicted RBP17.08■□□□□ 0.33
SF3B4-201ENST00000271628 ECM1Q16610 540 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 TCP11X2Q5H9J9 407 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 KCNK18Q7Z418 384 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 ZNF280CQ8ND82 737 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 AGBL1Q96MI9 1066 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 THAP9Q9H5L6 903 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 EMILIN3Q9NT22 766 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 GGA3Q9NZ52 723 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 PPP1R9AQ9ULJ8 1098 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 CTDP1Q9Y5B0 961 aaPredicted RBP17.08■□□□□ 0.33
SF3B4-201ENST00000271628 ZNF536O15090 1300 aa17.08■□□□□ 0.33
SF3B4-201ENST00000271628 PITPNM2Q9BZ72 1349 aa17.08■□□□□ 0.32
SF3B4-201ENST00000271628 IGLV3-22A0A075B6J6 115 aa17.08■□□□□ 0.32
SF3B4-201ENST00000271628 FLOT1O75955 427 aa17.08■□□□□ 0.32
SF3B4-201ENST00000271628 PTPRAP18433 802 aa17.08■□□□□ 0.32
SF3B4-201ENST00000271628 GHRHRQ02643 423 aa17.08■□□□□ 0.32
SF3B4-201ENST00000271628 DYMQ7RTS9 669 aa17.08■□□□□ 0.32
SF3B4-201ENST00000271628 USP27XA6NNY8 438 aa17.07■□□□□ 0.32
SF3B4-201ENST00000271628 KCNJ18B7U540 433 aa17.07■□□□□ 0.32
SF3B4-201ENST00000271628 C19orf81C9J6K1 198 aa17.07■□□□□ 0.32
SF3B4-201ENST00000271628 ZBED4O75132 1171 aa17.07■□□□□ 0.32
SF3B4-201ENST00000271628 EEF1GP26641 437 aaKnown RBP17.07■□□□□ 0.32
SF3B4-201ENST00000271628 EPS15P42566 896 aa17.07■□□□□ 0.32
SF3B4-201ENST00000271628 SETQ01105 290 aaPredicted RBP17.07■□□□□ 0.32
SF3B4-201ENST00000271628 KCNJ12Q14500 433 aa17.07■□□□□ 0.32
SF3B4-201ENST00000271628 CEP55Q53EZ4 464 aa17.07■□□□□ 0.32
SF3B4-201ENST00000271628 NCAPH2Q6IBW4 605 aa17.07■□□□□ 0.32
SF3B4-201ENST00000271628 KIF18AQ8NI77 898 aa17.07■□□□□ 0.32
SF3B4-201ENST00000271628 P2RX5Q93086 422 aa17.07■□□□□ 0.32
SF3B4-201ENST00000271628 TRIM47Q96LD4 638 aa17.07■□□□□ 0.32
SF3B4-201ENST00000271628 ARID3AQ99856 593 aa17.07■□□□□ 0.32
SF3B4-201ENST00000271628 FHDC1Q9C0D6 1143 aaPredicted RBP17.07■□□□□ 0.32
SF3B4-201ENST00000271628 RPAP3Q9H6T3 665 aaPredicted RBP17.07■□□□□ 0.32
SF3B4-201ENST00000271628 SBF1O95248 1867 aa17.07■□□□□ 0.32
SF3B4-201ENST00000271628 PLA2G4BP0C869 781 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 CATSPER3Q86XQ3 398 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 ZNF592Q92610 1267 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 ZKSCAN4Q969J2 545 aaPredicted RBP17.06■□□□□ 0.32
SF3B4-201ENST00000271628 KLRG1Q96E93 195 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 CGNQ9P2M7 1197 aaKnown RBP17.06■□□□□ 0.32
SF3B4-201ENST00000271628 DNM3Q9UQ16 869 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 POTEB3A0JP26 581 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 POTECB2RU33 542 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 E9PMD0 336 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 N4BP3O15049 544 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 MED24O75448 989 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 FCER1AP12319 257 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 IDEP14735 1019 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 STAT3P40763 770 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 HIRAP54198 1017 aaPredicted RBP17.06■□□□□ 0.32
SF3B4-201ENST00000271628 KRT31Q15323 416 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 TTI2Q6NXR4 508 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 POTEBQ6S5H4 581 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 KRT26Q7Z3Y9 468 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 CYP2W1Q8TAV3 490 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 C12orf42Q96LP6 360 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 POLR3CQ9BUI4 534 aaPredicted RBP17.06■□□□□ 0.32
SF3B4-201ENST00000271628 TMX1Q9H3N1 280 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 MAGEC2Q9UBF1 373 aaPredicted RBP17.06■□□□□ 0.32
SF3B4-201ENST00000271628 VAV3Q9UKW4 847 aa17.06■□□□□ 0.32
SF3B4-201ENST00000271628 TRIM49BA6NDI0 452 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 COBLO75128 1261 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 EHHADHQ08426 723 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 FAM114A1Q8IWE2 563 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 GUF1Q8N442 669 aaKnown RBP17.05■□□□□ 0.32
SF3B4-201ENST00000271628 CSGALNACT2Q8N6G5 542 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 KIAA0895Q8NCT3 520 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 DNAJC19Q96DA6 116 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 SRRTQ9BXP5 876 aaKnown RBP17.05■□□□□ 0.32
SF3B4-201ENST00000271628 SLC39A2Q9NP94 309 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 ADARB2Q9NS39 739 aaKnown RBP17.05■□□□□ 0.32
SF3B4-201ENST00000271628 ITIH6Q6UXX5 1313 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 MEIS1O00470 390 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 TEX33O43247 280 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 ALAS1P13196 640 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 PBX1P40424 430 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 COPB1P53618 953 aaKnown RBP17.05■□□□□ 0.32
SF3B4-201ENST00000271628 PMS1P54277 932 aaKnown RBP17.05■□□□□ 0.32
SF3B4-201ENST00000271628 PRAMEF18Q5VWM3 479 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 CENPPQ6IPU0 288 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 OTOP1Q7RTM1 612 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 CCDC65Q8IXS2 484 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 CPXCR1Q8N123 301 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 CLEC4DQ8WXI8 215 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 UIMC1Q96RL1 719 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 TRMT1Q9NXH9 659 aaKnown RBP17.05■□□□□ 0.32
SF3B4-201ENST00000271628 ZHX2Q9Y6X8 837 aa17.05■□□□□ 0.32
SF3B4-201ENST00000271628 CCP110O43303 1012 aa17.04■□□□□ 0.32
SF3B4-201ENST00000271628 SSBP05455 408 aaKnown RBP eCLIP17.04■□□□□ 0.32
SF3B4-201ENST00000271628 NOL9Q5SY16 702 aaKnown RBP17.04■□□□□ 0.32
SF3B4-201ENST00000271628 LRCH2Q5VUJ6 765 aa17.04■□□□□ 0.32
SF3B4-201ENST00000271628 FOXR2Q6PJQ5 311 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms