RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 MOCS3O95396 460 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 FTCDO95954 541 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 CLTAP09496 248 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 RCAN1P53805 252 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 PLTPP55058 493 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 CACNB1Q02641 598 aaPredicted RBP11.7□□□□□ -0.54
CD44-201ENST00000263398 IFT88Q13099 833 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 HACE1Q8IYU2 909 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 METTL13Q8N6R0 699 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 LRRC8CQ8TDW0 803 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 WHAMMQ8TF30 809 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 SUGCTQ9HAC7 445 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 PFDN4Q9NQP4 134 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 NRBP2Q9NSY0 501 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 RIPOR2Q9Y4F9 1068 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 PCDHA13Q9Y5I0 950 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 ADGRL3Q9HAR2 1447 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 TXNDC9O14530 226 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 IFNAR2P48551 515 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 IRX4P78413 519 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 C2orf54Q08AI8 447 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 PPP2R5AQ15172 486 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 ALS2CLQ60I27 953 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 TTC19Q6DKK2 380 aaPredicted RBP11.7□□□□□ -0.54
CD44-201ENST00000263398 ARMC9Q7Z3E5 817 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 PIGBQ92521 554 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 RIOK1Q9BRS2 568 aaKnown RBP11.7□□□□□ -0.54
CD44-201ENST00000263398 ALDH8A1Q9H2A2 487 aaPredicted RBP11.7□□□□□ -0.54
CD44-201ENST00000263398 TMEM206Q9H813 350 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 ATP8A1Q9Y2Q0 1164 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 TTLL3Q9Y4R7 772 aa11.7□□□□□ -0.54
CD44-201ENST00000263398 PLEKHA8P1O95397 391 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 APBA3O96018 575 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 SLC16A2P36021 539 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 IL9RQ01113 521 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 MECOMQ03112 1051 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 EMBQ6PCB8 327 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 PPP4R3CPQ6ZMV5 832 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 MAP7D3Q8IWC1 876 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 SPICE1Q8N0Z3 855 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 ACCSQ96QU6 501 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 SPZ1Q9BXG8 430 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 DHX36Q9H2U1 1008 aaKnown RBP11.69□□□□□ -0.54
CD44-201ENST00000263398 SH3GLB2Q9NR46 395 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 CASQ2O14958 399 aaPredicted RBP11.69□□□□□ -0.54
CD44-201ENST00000263398 CLIC2O15247 247 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 PLA2G4BP0C869 781 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 BMP3P12645 472 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 DHX9Q08211 1270 aaKnown RBP11.69□□□□□ -0.54
CD44-201ENST00000263398 TMED8Q6PL24 325 aaPredicted RBP11.69□□□□□ -0.54
CD44-201ENST00000263398 TRIM50Q86XT4 487 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 EFCAB13Q8IY85 973 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 ANKRD35Q8N283 1001 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 DYNLL2Q96FJ2 89 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 CSRNP1Q96S65 589 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 ABCB6Q9NP58 842 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 BSDC1Q9NW68 430 aaPredicted RBP11.69□□□□□ -0.54
CD44-201ENST00000263398 GCNT4Q9P109 453 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 CSADQ9Y600 493 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 CYP27B1O15528 508 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 LRRN2O75325 713 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 MAPK4P31152 587 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 CC2D2BQ6DHV5 1058 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 TBC1D10CQ8IV04 446 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 RPUSD2Q8IZ73 545 aaKnown RBP11.69□□□□□ -0.54
CD44-201ENST00000263398 HAUS2Q9NVX0 235 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 GDAQ9Y2T3 454 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 TULP4Q9NRJ4 1543 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 DIXDC1Q155Q3 683 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 TSGA10IPQ3SY00 556 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 PPP1R2P3Q6NXS1 205 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 ALKBH5Q6P6C2 394 aaKnown RBP11.69□□□□□ -0.54
CD44-201ENST00000263398 SEPT14Q6ZU15 432 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 PDZD4Q76G19 769 aaPredicted RBP11.69□□□□□ -0.54
CD44-201ENST00000263398 MIPOL1Q8TD10 442 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 ADAMTS1Q9UHI8 967 aa11.69□□□□□ -0.54
CD44-201ENST00000263398 PNPLA6Q8IY17 1366 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 A0A087WUV0 522 aaPredicted RBP11.68□□□□□ -0.54
CD44-201ENST00000263398 GFPT2O94808 682 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 CYP2E1P05181 493 aaPredicted RBP11.68□□□□□ -0.54
CD44-201ENST00000263398 PIK3CAP42336 1068 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 SEPT6Q14141 434 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 MUM1Q2TAK8 710 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 SLFNL1Q499Z3 407 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 SUSD4Q5VX71 490 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 KAZNQ674X7 775 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 MB21D2Q8IYB1 491 aaPredicted RBP11.68□□□□□ -0.54
CD44-201ENST00000263398 MMS19Q96T76 1030 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 PARVGQ9HBI0 331 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 PTPN22Q9Y2R2 807 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 KIDINS220Q9ULH0 1771 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 QRICH2Q9H0J4 1663 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 USP17L3A6NCW0 530 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 USP17L4A6NCW7 530 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 M0QZ92 97 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 CTNND1O60716 968 aaKnown RBP11.68□□□□□ -0.54
CD44-201ENST00000263398 SGO2Q562F6 1265 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 USP17L1Q7RTZ2 530 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 KIF2CQ99661 725 aa11.68□□□□□ -0.54
CD44-201ENST00000263398 INO80Q9ULG1 1556 aaPredicted RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms