RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 GUCY2FP51841 1108 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 NFX1Q12986 1120 aaKnown RBP20.6■□□□□ 0.89
SMPD3-201ENST00000219334 ADCK5Q3MIX3 580 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 NXNQ6DKJ4 435 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 CAPN12Q6ZSI9 719 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 P2RX5Q93086 422 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 PPP1R16BQ96T49 567 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 FAM49AQ9H0Q0 323 aaPredicted RBP20.6■□□□□ 0.89
SMPD3-201ENST00000219334 CARMIL3Q8ND23 1372 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 ADAT2Q7Z6V5 191 aaKnown RBP20.6■□□□□ 0.89
SMPD3-201ENST00000219334 SIX6OS1Q8N1H7 587 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.6■□□□□ 0.89
SMPD3-201ENST00000219334 KDM5CP41229 1560 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 EIF3CLB5ME19 914 aaKnown RBP20.6■□□□□ 0.89
SMPD3-201ENST00000219334 ARL4AP40617 200 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 LRRC41Q15345 812 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 EIF3CQ99613 913 aaKnown RBP20.6■□□□□ 0.89
SMPD3-201ENST00000219334 RPF1Q9H9Y2 349 aaKnown RBP20.6■□□□□ 0.89
SMPD3-201ENST00000219334 LMCD1Q9NZU5 365 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 TMEM63CQ9P1W3 806 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 PCDHA5Q9Y5H7 936 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 SH2B2O14492 632 aaPredicted RBP20.6■□□□□ 0.89
SMPD3-201ENST00000219334 SRGAP2CP0DJJ0 459 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 ARHGAP4P98171 946 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 DPH5Q9H2P9 285 aa20.6■□□□□ 0.89
SMPD3-201ENST00000219334 CYP2D7A0A087X1C5 515 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 GOLGA8SH3BPF8 625 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 IFNAR1P17181 557 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 PPARDQ03181 441 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 DSTYKQ6XUX3 929 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 RNF139Q8WU17 664 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 ZHX2Q9Y6X8 837 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 PASKQ96RG2 1323 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 CLIC2O15247 247 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 UBE2SQ16763 222 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 ZSWIM5Q9P217 1185 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 PRR36Q9H6K5 1346 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 MARK3P27448 753 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 CATSPER4Q7RTX7 472 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 CCNYQ8ND76 341 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 ZNF653Q96CK0 615 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 TTC1Q99614 292 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 RNF181Q9P0P0 153 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 EPN1Q9Y6I3 576 aaPredicted RBP20.59■□□□□ 0.89
SMPD3-201ENST00000219334 RPAP1Q9BWH6 1393 aaPredicted RBP20.59■□□□□ 0.89
SMPD3-201ENST00000219334 MYL1P05976 194 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 EEF1GP26641 437 aaKnown RBP20.59■□□□□ 0.89
SMPD3-201ENST00000219334 HOXA13P31271 388 aaPredicted RBP20.59■□□□□ 0.89
SMPD3-201ENST00000219334 ECE1P42892 770 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 ARHGEF5Q12774 1597 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 RASEFQ8IZ41 740 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 NLRP4Q96MN2 994 aa20.59■□□□□ 0.89
SMPD3-201ENST00000219334 PPFIA4O75335 1185 aa20.58■□□□□ 0.89
SMPD3-201ENST00000219334 HEXIM1O94992 359 aaKnown RBP20.58■□□□□ 0.89
SMPD3-201ENST00000219334 YWHAGP61981 247 aaKnown RBP eCLIP20.58■□□□□ 0.89
SMPD3-201ENST00000219334 WRNIP1Q96S55 665 aa20.58■□□□□ 0.89
SMPD3-201ENST00000219334 OSBPL3Q9H4L5 887 aa20.58■□□□□ 0.89
SMPD3-201ENST00000219334 PIH1D3Q9NQM4 214 aaKnown RBP20.58■□□□□ 0.89
SMPD3-201ENST00000219334 CASQ2O14958 399 aaPredicted RBP20.58■□□□□ 0.89
SMPD3-201ENST00000219334 MMP1P03956 469 aa20.58■□□□□ 0.89
SMPD3-201ENST00000219334 MAPK4P31152 587 aa20.58■□□□□ 0.89
SMPD3-201ENST00000219334 GBP1P32455 592 aa20.58■□□□□ 0.89
SMPD3-201ENST00000219334 RSRC1Q96IZ7 334 aaKnown RBP20.58■□□□□ 0.89
SMPD3-201ENST00000219334 K7ERI5 159 aa20.58■□□□□ 0.88
SMPD3-201ENST00000219334 NSUN7Q8NE18 718 aaKnown RBP20.58■□□□□ 0.88
SMPD3-201ENST00000219334 DCAF4Q8WV16 495 aa20.58■□□□□ 0.88
SMPD3-201ENST00000219334 TCP11Q8WWU5 503 aa20.58■□□□□ 0.88
SMPD3-201ENST00000219334 RUNDC3BQ96NL0 473 aa20.58■□□□□ 0.88
SMPD3-201ENST00000219334 POLR3EQ9NVU0 708 aa20.58■□□□□ 0.88
SMPD3-201ENST00000219334 ALCAMQ13740 583 aa20.58■□□□□ 0.88
SMPD3-201ENST00000219334 DGKHQ86XP1 1220 aa20.58■□□□□ 0.88
SMPD3-201ENST00000219334 SEPT2Q15019 361 aa20.57■□□□□ 0.88
SMPD3-201ENST00000219334 ECE2O60344 883 aa20.57■□□□□ 0.88
SMPD3-201ENST00000219334 FTOQ9C0B1 505 aaKnown RBP eCLIP20.57■□□□□ 0.88
SMPD3-201ENST00000219334 HOXD10P28358 340 aa20.57■□□□□ 0.88
SMPD3-201ENST00000219334 CACNB3P54284 484 aa20.57■□□□□ 0.88
SMPD3-201ENST00000219334 STXBP2Q15833 593 aa20.57■□□□□ 0.88
SMPD3-201ENST00000219334 EFCAB13Q8IY85 973 aa20.57■□□□□ 0.88
SMPD3-201ENST00000219334 HDAC11Q96DB2 347 aa20.57■□□□□ 0.88
SMPD3-201ENST00000219334 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.57■□□□□ 0.88
SMPD3-201ENST00000219334 H7C1W4 665 aa20.57■□□□□ 0.88
SMPD3-201ENST00000219334 MAN2A1Q16706 1144 aa20.57■□□□□ 0.88
SMPD3-201ENST00000219334 SLC27A3Q5K4L6 730 aa20.57■□□□□ 0.88
SMPD3-201ENST00000219334 TMED8Q6PL24 325 aaPredicted RBP20.57■□□□□ 0.88
SMPD3-201ENST00000219334 C17orf53Q8N3J3 647 aaPredicted RBP20.57■□□□□ 0.88
SMPD3-201ENST00000219334 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.57■□□□□ 0.88
SMPD3-201ENST00000219334 PPP2R2CQ9Y2T4 447 aa20.57■□□□□ 0.88
SMPD3-201ENST00000219334 ANGPTL3Q9Y5C1 460 aa20.57■□□□□ 0.88
SMPD3-201ENST00000219334 SLFN12LQ6IEE8 588 aa20.57■□□□□ 0.88
SMPD3-201ENST00000219334 FAM71BQ8TC56 605 aa20.57■□□□□ 0.88
SMPD3-201ENST00000219334 BRIP1Q9BX63 1249 aa20.57■□□□□ 0.88
SMPD3-201ENST00000219334 USP17L5A8MUK1 530 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 SASH1O94885 1247 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 PDE1BQ01064 536 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 OR6B2Q6IFH4 312 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 TDRD3Q9H7E2 651 aaKnown RBP20.56■□□□□ 0.88
SMPD3-201ENST00000219334 EMILIN3Q9NT22 766 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 SGK1O00141 431 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 PLA2G4BP0C869 781 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 MXI1P50539 228 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms