RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 EDC3Q96F86 508 aaKnown RBP11.3□□□□□ -0.6
VCL-201ENST00000211998 LRRC37BQ96QE4 947 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 TTC1Q99614 292 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 TRPC5Q9UL62 973 aaPredicted RBP11.3□□□□□ -0.6
VCL-201ENST00000211998 AFG3L2Q9Y4W6 797 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 KDRP35968 1356 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 SNUPNO95149 360 aaKnown RBP11.3□□□□□ -0.6
VCL-201ENST00000211998 SKOR1P84550 965 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 ZBED6P86452 979 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 CDR2Q01850 454 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 RGS9BPQ6ZS82 235 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 WDR24Q96S15 920 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 NDE1Q9NXR1 346 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 ARMCX3Q9UH62 379 aaPredicted RBP11.3□□□□□ -0.6
VCL-201ENST00000211998 PNMA2Q9UL42 364 aa11.3□□□□□ -0.6
VCL-201ENST00000211998 CFLARO15519 480 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 LARGE1O95461 756 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 LONP1P36776 959 aaKnown RBP11.29□□□□□ -0.6
VCL-201ENST00000211998 SLC12A2P55011 1212 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 CTSWP56202 376 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 AP2B1P63010 937 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 MESDQ14696 234 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 REXO1Q8N1G1 1221 aaKnown RBP11.29□□□□□ -0.6
VCL-201ENST00000211998 MYCT1Q8N699 235 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 RNF34Q969K3 372 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 NEURL1BA8MQ27 555 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 MDH1P40925 334 aaKnown RBP11.29□□□□□ -0.6
VCL-201ENST00000211998 TNFAIP1Q13829 316 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 KIF22Q14807 665 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 DLGAP5Q15398 846 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 CHURC1Q8WUH1 139 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 VIPAS39Q9H9C1 493 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 BZW2Q9Y6E2 419 aaKnown RBP11.29□□□□□ -0.6
VCL-201ENST00000211998 KCNA3P22001 575 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 YWHAEP62258 255 aaKnown RBP11.29□□□□□ -0.6
VCL-201ENST00000211998 BFSP1Q12934 665 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 RESTQ13127 1097 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 CMTR1Q8N1G2 835 aaKnown RBP11.29□□□□□ -0.6
VCL-201ENST00000211998 ZNF496Q96IT1 587 aaPredicted RBP11.29□□□□□ -0.6
VCL-201ENST00000211998 SERPINI1Q99574 410 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 AS3MTQ9HBK9 375 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 ATP8A2Q9NTI2 1148 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 EXOC1LA0A1B0GW35 172 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 ACSL3O95573 720 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 PPARAQ07869 468 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 NLRX1Q86UT6 975 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 MAPKAPK5Q8IW41 473 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 RDH13Q8NBN7 331 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 SCYL1Q96KG9 808 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 ZMYM6O95789 1325 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 ADCY9O60503 1353 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 SUPT3HO75486 399 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 GPC4O75487 556 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 MT-ND3P03897 115 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 CCND1P24385 295 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 KIF11P52732 1056 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 FAM98CQ17RN3 349 aaKnown RBP11.29□□□□□ -0.6
VCL-201ENST00000211998 KAZNQ674X7 775 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 NSUN7Q8NE18 718 aaKnown RBP11.29□□□□□ -0.6
VCL-201ENST00000211998 SPC25Q9HBM1 224 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.29□□□□□ -0.6
VCL-201ENST00000211998 TRAF3IP3Q9Y228 551 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 TMEM2Q9UHN6 1383 aa11.29□□□□□ -0.6
VCL-201ENST00000211998 ESYT3A0FGR9 886 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 PTPRTO14522 1441 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 KRT14P02533 472 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 RPS8P62241 208 aaKnown RBP11.28□□□□□ -0.6
VCL-201ENST00000211998 TFAP4Q01664 338 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 ARMCX5Q6P1M9 558 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 TGFBRAP1Q8WUH2 860 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 HDAC6Q9UBN7 1215 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 M0QZ92 97 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 NCF2P19878 526 aaPredicted RBP11.28□□□□□ -0.6
VCL-201ENST00000211998 PLA2G4AP47712 749 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 CTCFP49711 727 aaPredicted RBP11.28□□□□□ -0.6
VCL-201ENST00000211998 SPARCL1Q14515 664 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 TMEM259Q4ZIN3 620 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 SESTD1Q86VW0 696 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 MLXIPLQ9NP71 852 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 CARMIL3Q8ND23 1372 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 IRAK1P51617 712 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 MRPS35P82673 323 aaKnown RBP11.28□□□□□ -0.6
VCL-201ENST00000211998 ZYXQ15942 572 aaKnown RBP11.28□□□□□ -0.6
VCL-201ENST00000211998 SGO2Q562F6 1265 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 TTLL7Q6ZT98 887 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 TRMT10CQ7L0Y3 403 aaKnown RBP11.28□□□□□ -0.6
VCL-201ENST00000211998 UNC5CLQ8IV45 518 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 HACE1Q8IYU2 909 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 TEKT4Q8WW24 435 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 UIMC1Q96RL1 719 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 TRIM55Q9BYV6 548 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 SMYD3Q9H7B4 428 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 GGT7Q9UJ14 662 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 UNC13AQ9UPW8 1703 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 DAPK3O43293 454 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 ARHGEF9O43307 516 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 KRT75O95678 551 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 TRMT2AQ8IZ69 625 aaKnown RBP11.28□□□□□ -0.6
VCL-201ENST00000211998 SH2D3CQ8N5H7 860 aa11.28□□□□□ -0.6
VCL-201ENST00000211998 PRPF31Q8WWY3 499 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms