RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 Sh2b2Q9JID9 621 aa9.42□□□□□ -0.9
Trim39-205ENSMUST00000173369 Syt5Q9R0N5 386 aa9.42□□□□□ -0.9
Trim39-205ENSMUST00000173369 Kntc1Q8C3Y4 2207 aa9.42□□□□□ -0.9
Trim39-205ENSMUST00000173369 Ly6dP35459 127 aa9.42□□□□□ -0.9
Trim39-205ENSMUST00000173369 Rbp3P49194 1234 aa9.42□□□□□ -0.9
Trim39-205ENSMUST00000173369 A1cfQ5YD48 595 aa9.42□□□□□ -0.9
Trim39-205ENSMUST00000173369 Tfe3Q64092 572 aaKnown RBP9.42□□□□□ -0.9
Trim39-205ENSMUST00000173369 Srd5a1Q68FF9 255 aa9.42□□□□□ -0.9
Trim39-205ENSMUST00000173369 Wdr19Q3UGF1 1341 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Pramel3A2AHA7 463 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Gm7903A2AWL1 463 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 AV320801A2AWL3 467 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Gm15023L7MUB4 467 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 MafgO54790 162 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Nr5a1P33242 462 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Usp49Q6P9L4 685 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Krt9Q6RHW0 743 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Nek9Q8K1R7 984 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Gcnt4E9Q649 455 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Tal1P22091 329 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Gadd45bP22339 160 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 U2af2P26369 475 aaKnown RBP9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Cdh15P33146 784 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Lig1P37913 916 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Muc1Q02496 630 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Wdr70Q3TWF6 657 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Rsph3aQ3UFY4 516 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 PhkbQ7TSH2 1085 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 GlyctkQ8QZY2 523 aa9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Hic2Q9JLZ6 619 aaKnown RBP9.41□□□□□ -0.9
Trim39-205ENSMUST00000173369 Btnl4A2CG29 586 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Rsph10bE9PYQ0 876 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Gm10134F6ZQC6 126 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Hoxd10P28359 340 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 C2cd5Q7TPS5 1016 aaKnown RBP9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Ccdc172Q810N9 267 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Prkag2Q91WG5 566 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Krt82Q99M74 516 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 PycardQ9EPB4 193 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Cntnap2Q9CPW0 1332 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Rnf19bA2A7Q9 732 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Tex13cD3YU32 604 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 TrdnE9Q9K5 693 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Mt-CybP00158 381 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Taf1bP97358 586 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Skiv2lQ6NZR5 1244 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Lrrc56Q8K375 552 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Vwa5aQ99KC8 793 aaKnown RBP9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Iqca1Q9CUL5 857 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Tmem192Q9CXT7 266 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 2310002L09RikQ9D7L5 217 aa9.4□□□□□ -0.9
Trim39-205ENSMUST00000173369 Cntnap5cQ0V8T7 1305 aa9.4□□□□□ -0.91
Trim39-205ENSMUST00000173369 Guca2bO09051 106 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Api5O35841 504 aaKnown RBP9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Cbfa2t2O70374 594 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Kcna2P63141 499 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Lrrfip1Q3UZ39 729 aaKnown RBP9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Meis1Q60954 390 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Cyp7b1Q60991 507 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Fam205cQ80YD3 371 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Cracr2bQ80ZJ8 394 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Defb19Q8K3I8 83 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Havcr2Q8VIM0 281 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 1700129C05RikQ9CQ77 218 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Krt34Q9D646 392 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Tfr2Q9JKX3 798 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Arih1Q9Z1K5 555 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Sbf2E9PXF8 1872 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Zgrf1Q0VGT4 1863 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Sbf1Q6ZPE2 1867 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Zfp213E9QAW0 468 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Gm21969J3QJZ1 289 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 FosP01101 380 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Gjb1P28230 283 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Cd22P35329 862 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Samhd1Q60710 627 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Krt87Q6IMF0 495 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Pdcl2Q78Y63 240 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Kbtbd4Q8R179 534 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Itgbl1Q8VDV0 494 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Ca9Q8VHB5 437 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Hps3Q91VB4 1002 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Stk38Q91VJ4 465 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Xpo5Q924C1 1204 aaKnown RBP9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 NptxrQ99J85 493 aa9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Ktn1Q61595 1327 aaKnown RBP9.39□□□□□ -0.91
Trim39-205ENSMUST00000173369 Tbc1d2B1AVH7 922 aa9.38□□□□□ -0.91
Trim39-205ENSMUST00000173369 Gm5134E9QAB5 671 aa9.38□□□□□ -0.91
Trim39-205ENSMUST00000173369 Pcmtd1P59913 357 aa9.38□□□□□ -0.91
Trim39-205ENSMUST00000173369 Spink5Q148R4 1017 aa9.38□□□□□ -0.91
Trim39-205ENSMUST00000173369 Fscn2Q32M02 492 aa9.38□□□□□ -0.91
Trim39-205ENSMUST00000173369 Olfr832Q7TRG9 312 aa9.38□□□□□ -0.91
Trim39-205ENSMUST00000173369 Cep85Q8BMK0 761 aa9.38□□□□□ -0.91
Trim39-205ENSMUST00000173369 Vmn1r191Q8K4D0 298 aa9.38□□□□□ -0.91
Trim39-205ENSMUST00000173369 Tspyl4Q8VD63 406 aa9.38□□□□□ -0.91
Trim39-205ENSMUST00000173369 Pabpc6Q9D4E6 643 aaKnown RBP9.38□□□□□ -0.91
Trim39-205ENSMUST00000173369 Mtmr9Q9Z2D0 545 aa9.38□□□□□ -0.91
Trim39-205ENSMUST00000173369 Mllt3A2AM29 569 aa9.38□□□□□ -0.91
Trim39-205ENSMUST00000173369 Cntnap3E9PY62 1287 aa9.38□□□□□ -0.91
Trim39-205ENSMUST00000173369 Gm8909G3UXE9 396 aa9.38□□□□□ -0.91
Retrieved 100 of 22,080 RNA–protein pairs in 290.8 ms