RNA–Protein interactions for RNA: YDL108W

KIN28, Transcript of Serine/threonine protein kinase, subunit of transcription factor TFIIH, yeast

Gene KIN28, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
KIN28	YDL108W	CHK1	P38147	527 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	VID24	P38263	362 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	YEL057C	P39983	233 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	GIM4	P40005	111 aa	Known RBP	4.55	□□□□□ -1.68
KIN28	YDL108W	OTU1	P43558	301 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	LOH1	P47055	219 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	IBA57	P47158	497 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	MND1	P53102	219 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	YGL117W	P53133	265 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	YGL114W	P53134	725 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	RMD9	P53140	646 aa	Known RBP	4.55	□□□□□ -1.68
KIN28	YDL108W	LIF1	P53150	421 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	BET4	Q00618	327 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	YPL108W	Q02872	168 aa	Predicted RBP	4.55	□□□□□ -1.68
KIN28	YDL108W	ARX1	Q03862	593 aa	Known RBP	4.55	□□□□□ -1.68
KIN28	YDL108W	YLL007C	Q07799	665 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	YLL067C	Q07888	1374 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	RAD9	P14737	1309 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	MSF1	P08425	469 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	LPD1	P09624	499 aa	Known RBP	4.54	□□□□□ -1.68
KIN28	YDL108W	MRPL9	P31334	269 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	ARO4	P32449	370 aa	Known RBP	4.54	□□□□□ -1.68
KIN28	YDL108W	SSO1	P32867	290 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	NUF2	P33895	451 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	AGP2	P38090	596 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	KTR3	P38130	404 aa	Predicted RBP	4.54	□□□□□ -1.68
KIN28	YDL108W	YPT10	P38146	199 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	TAE1	P38340	232 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	JHD1	P40034	492 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	THO1	P40040	218 aa	Known RBP	4.54	□□□□□ -1.68
KIN28	YDL108W	PHB1	P40961	287 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	GTO1	P48239	356 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	GLO1	P50107	326 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	YGR126W	P53274	230 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	PXR1	P53335	271 aa	Predicted RBP	4.54	□□□□□ -1.68
KIN28	YDL108W	SLT2	Q00772	484 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	SPO19	Q03029	223 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	PRM15	Q03262	622 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	GPN3	Q06543	272 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	GSH2	Q08220	491 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	BTS1	Q12051	335 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	YOS9	Q99220	542 aa		4.54	□□□□□ -1.68
KIN28	YDL108W	RPL7A	P05737	244 aa	Known RBP	4.53	□□□□□ -1.68
KIN28	YDL108W	GPH1	P06738	902 aa	Known RBP	4.53	□□□□□ -1.68
KIN28	YDL108W	ADE5,7	P07244	802 aa	Known RBP	4.53	□□□□□ -1.68
KIN28	YDL108W	CDC23	P16522	626 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	SRV2	P17555	526 aa	Known RBP	4.53	□□□□□ -1.68
KIN28	YDL108W	UGA1	P17649	471 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	YAP1	P19880	650 aa	Known RBP	4.53	□□□□□ -1.68
KIN28	YDL108W	SPE2	P21182	396 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	ICL1	P28240	557 aa	Predicted RBP	4.53	□□□□□ -1.68
KIN28	YDL108W	MRP20	P32387	263 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	CPR5	P35176	225 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	KAP104	P38217	918 aa	Known RBP	4.53	□□□□□ -1.68
KIN28	YDL108W	RRT2	P38332	387 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	ERC1	P38767	581 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	FSH1	P38777	243 aa	Known RBP	4.53	□□□□□ -1.68
KIN28	YDL108W	END3	P39013	349 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	SEC72	P39742	193 aa	Known RBP	4.53	□□□□□ -1.68
KIN28	YDL108W	FMC1	P40491	155 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	IMA1	P53051	589 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	FMP30	Q02883	468 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	WAR1	Q03631	944 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	YDR239C	Q03780	787 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	URH1	Q04179	340 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	THI7	Q05998	598 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	YDL114W	Q07530	308 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	RPL7B	Q12213	244 aa	Known RBP	4.53	□□□□□ -1.68
KIN28	YDL108W	LSO2	Q3E772	92 aa	Known RBP	4.53	□□□□□ -1.68
KIN28	YDL108W	NCB2	Q92317	146 aa		4.53	□□□□□ -1.68
KIN28	YDL108W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.52	□□□□□ -1.69	not detected
KIN28	YDL108W	CDC37	P06101	506 aa	Known RBP	4.52	□□□□□ -1.69
KIN28	YDL108W	RAD7	P06779	565 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	PET122	P10355	254 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	TCP1	P12612	559 aa	Known RBP	4.52	□□□□□ -1.69
KIN28	YDL108W	PDE1	P22434	369 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	RVS161	P25343	265 aa	Known RBP	4.52	□□□□□ -1.69
KIN28	YDL108W	ADH7	P25377	361 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	AFG1	P32317	509 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	YMC1	P32331	307 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	ARP2	P32381	391 aa	Known RBP	4.52	□□□□□ -1.69
KIN28	YDL108W	GCD7	P32502	381 aa	Predicted RBP	4.52	□□□□□ -1.69
KIN28	YDL108W	GEX2	P36173	615 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	MRPL10	P36520	322 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	EGD2	P38879	174 aa	Known RBP	4.52	□□□□□ -1.69
KIN28	YDL108W	PAC2	P39937	518 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	RGI2	P40188	164 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	SOK1	P40317	901 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	IST3	P40565	148 aa	Predicted RBP	4.52	□□□□□ -1.69
KIN28	YDL108W	ELP2	P42935	788 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	COG1	P53079	417 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	TWF1	P53250	332 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	REG1	Q00816	1014 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	AAT1	Q01802	451 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	MRS2	Q01926	470 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	KAP120	Q02932	1032 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	RPN9	Q04062	393 aa	Known RBP	4.52	□□□□□ -1.69
KIN28	YDL108W	YEH2	Q07950	538 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	NRT1	Q08485	598 aa		4.52	□□□□□ -1.69
KIN28	YDL108W	DDC1	Q08949	612 aa		4.52	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 51 ms