RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 PLEKHO2Q8TD55 490 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 ZCCHC14Q8WYQ9 949 aaKnown RBP1.34□□□□□ -2.19
VPS35-212ENST00000640313 DHRS1Q96LJ7 313 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 SLC6A18Q96N87 628 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 CLIC6Q96NY7 704 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 LMF1Q96S06 567 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 WRNIP1Q96S55 665 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 BRIP1Q9BX63 1249 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 LRRC3Q9BY71 257 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 KRTAP1-5Q9BYS1 174 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 SLC2A4RGQ9NR83 387 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 PTGFRNQ9P2B2 879 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 ZDHHC9Q9Y397 364 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 SF3B6Q9Y3B4 125 aaKnown RBP1.34□□□□□ -2.19
VPS35-212ENST00000640313 SIT1Q9Y3P8 196 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 RWDD3Q9Y3V2 267 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 PCDHB14Q9Y5E9 798 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 FHOD1Q9Y613 1164 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 USP31Q70CQ4 1352 aa1.34□□□□□ -2.2
VPS35-212ENST00000640313 A0A0A6YYK5 440 aaPredicted RBP1.33□□□□□ -2.2
VPS35-212ENST00000640313 TMEM191CA6NGB0 347 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 MASP2O00187 686 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 LDHBP07195 334 aaKnown RBP1.33□□□□□ -2.2
VPS35-212ENST00000640313 CDK4P11802 303 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 COL6A1P12109 1028 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 IFNGR1P15260 489 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 NME1P15531 152 aaKnown RBP1.33□□□□□ -2.2
VPS35-212ENST00000640313 GARTP22102 1010 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 DNAJA1P31689 397 aaKnown RBP1.33□□□□□ -2.2
VPS35-212ENST00000640313 SLC6A11P48066 632 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 CWF19L2Q2TBE0 894 aaKnown RBP1.33□□□□□ -2.2
VPS35-212ENST00000640313 LRRFIP1Q32MZ4 808 aaKnown RBP1.33□□□□□ -2.2
VPS35-212ENST00000640313 NOL9Q5SY16 702 aaKnown RBP1.33□□□□□ -2.2
VPS35-212ENST00000640313 ZNF362Q5T0B9 420 aaPredicted RBP1.33□□□□□ -2.2
VPS35-212ENST00000640313 LCE1EQ5T753 118 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 MEI1Q5TIA1 1274 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 INTS3Q68E01 1043 aaKnown RBP1.33□□□□□ -2.2
VPS35-212ENST00000640313 SYCE2Q6PIF2 218 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 FAM196AQ6ZSG2 479 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 Q6ZUG5 572 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 MICALCLQ6ZW33 695 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 POLNQ7Z5Q5 900 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 TAX1BP1Q86VP1 789 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 FUKQ8N0W3 1084 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 FBXO27Q8NI29 283 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 SEC14L1Q92503 715 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 FAM89AQ96GI7 184 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 AJUBAQ96IF1 538 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 TMEM74Q96NL1 305 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 ASB16Q96NS5 453 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 TTPALQ9BTX7 342 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 RSRP1Q9BUV0 290 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 AP5M1Q9H0R1 490 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 GP6Q9HCN6 339 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 BRMS1Q9HCU9 246 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 ADARB2Q9NS39 739 aaKnown RBP1.33□□□□□ -2.2
VPS35-212ENST00000640313 AURKAIP1Q9NWT8 199 aaPredicted RBP1.33□□□□□ -2.2
VPS35-212ENST00000640313 GULP1Q9UBP9 304 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 SUCOQ9UBS9 1254 aaKnown RBP1.33□□□□□ -2.2
VPS35-212ENST00000640313 BIN2Q9UBW5 565 aaPredicted RBP1.33□□□□□ -2.2
VPS35-212ENST00000640313 TMEFF2Q9UIK5 374 aaPredicted RBP1.33□□□□□ -2.2
VPS35-212ENST00000640313 DIS3Q9Y2L1 958 aaKnown RBP1.33□□□□□ -2.2
VPS35-212ENST00000640313 SLC30A1Q9Y6M5 507 aa1.33□□□□□ -2.2
VPS35-212ENST00000640313 TRBV23OR9-2A0A075B6M9 112 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 C7orf72A4D263 438 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 MEIS3P2A8K0S8 358 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 C9IYK1 514 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 AURKAO14965 403 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 NPHS1O60500 1241 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 KLHL18O94889 574 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 RHOBTB3O94955 611 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 LMNAP02545 664 aaKnown RBP1.32□□□□□ -2.2
VPS35-212ENST00000640313 FUCA1P04066 466 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 CHGBP05060 677 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 CD3EP07766 207 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 CD247P20963 164 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 PROZP22891 400 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 CTGFP29279 349 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 STAT5AP42229 794 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 PWP1Q13610 501 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 EPHA10Q5JZY3 1008 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 SNAP47Q5SQN1 464 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 LAIR1Q6GTX8 287 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 MILR1Q7Z6M3 343 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 RALYLQ86SE5 291 aaKnown RBP1.32□□□□□ -2.2
VPS35-212ENST00000640313 RELL1Q8IUW5 271 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 SLITRK4Q8IW52 837 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 CCDC144CPQ8IYA2 1237 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 REXO1Q8N1G1 1221 aaKnown RBP1.32□□□□□ -2.2
VPS35-212ENST00000640313 FIBCD1Q8N539 461 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 GOLM1Q8NBJ4 401 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 SMARCC1Q92922 1105 aaPredicted RBP1.32□□□□□ -2.2
VPS35-212ENST00000640313 BRF1Q92994 677 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 CLIP3Q96DZ5 547 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 NEIL1Q96FI4 390 aaPredicted RBP1.32□□□□□ -2.2
VPS35-212ENST00000640313 LRRC37BQ96QE4 947 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 TMEM209Q96SK2 561 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 SLC9A7Q96T83 725 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 KCNQ5Q9NR82 932 aa1.32□□□□□ -2.2
VPS35-212ENST00000640313 HSPBP1Q9NZL4 362 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms