RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 EIF3JO75822 258 aaKnown RBP11.31□□□□□ -0.6
CLN3-261ENST00000637686 ARIH2O95376 493 aa11.31□□□□□ -0.6
CLN3-261ENST00000637686 C6orf222P0C671 652 aaPredicted RBP11.31□□□□□ -0.6
CLN3-261ENST00000637686 CCND2P30279 289 aa11.31□□□□□ -0.6
CLN3-261ENST00000637686 GJA9P57773 515 aa11.31□□□□□ -0.6
CLN3-261ENST00000637686 HMGN5P82970 282 aaKnown RBP11.31□□□□□ -0.6
CLN3-261ENST00000637686 SSRP1Q08945 709 aaKnown RBP11.31□□□□□ -0.6
CLN3-261ENST00000637686 KCNA10Q16322 511 aa11.31□□□□□ -0.6
CLN3-261ENST00000637686 DUSP28Q4G0W2 176 aa11.31□□□□□ -0.6
CLN3-261ENST00000637686 PPP1R18Q6NYC8 613 aa11.31□□□□□ -0.6
CLN3-261ENST00000637686 CPLX2Q6PUV4 134 aaKnown RBP11.31□□□□□ -0.6
CLN3-261ENST00000637686 VSIG10LQ86VR7 867 aa11.31□□□□□ -0.6
CLN3-261ENST00000637686 ZNF713Q8N859 430 aaPredicted RBP11.31□□□□□ -0.6
CLN3-261ENST00000637686 SCFD2Q8WU76 684 aa11.31□□□□□ -0.6
CLN3-261ENST00000637686 FERMT2Q96AC1 680 aa11.31□□□□□ -0.6
CLN3-261ENST00000637686 RNF26Q9BY78 433 aaPredicted RBP11.31□□□□□ -0.6
CLN3-261ENST00000637686 AP5M1Q9H0R1 490 aa11.31□□□□□ -0.6
CLN3-261ENST00000637686 UPF3AQ9H1J1 476 aaKnown RBP11.31□□□□□ -0.6
CLN3-261ENST00000637686 RBM27Q9P2N5 1060 aaKnown RBP11.31□□□□□ -0.6
CLN3-261ENST00000637686 KIF3AQ9Y496 699 aa11.31□□□□□ -0.6
CLN3-261ENST00000637686 CTAGE5O15320 804 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 DTNBO60941 627 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 CDKL5O76039 1030 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 LARGE1O95461 756 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 HSP90AA1P07900 732 aaKnown RBP11.3□□□□□ -0.6
CLN3-261ENST00000637686 TXNP10599 105 aaKnown RBP11.3□□□□□ -0.6
CLN3-261ENST00000637686 CST5P28325 142 aaPredicted RBP11.3□□□□□ -0.6
CLN3-261ENST00000637686 ADCY7P51828 1080 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 ATN1P54259 1190 aaPredicted RBP11.3□□□□□ -0.6
CLN3-261ENST00000637686 NKX3-2P78367 333 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 BEX3Q00994 111 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 TTLL4Q14679 1199 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 GNASQ5JWF2 1037 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 CCSAPQ6IQ19 270 aaPredicted RBP11.3□□□□□ -0.6
CLN3-261ENST00000637686 TRIM22Q8IYM9 498 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 NECAB1Q8N987 351 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 COPS5Q92905 334 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 TSEN34Q9BSV6 310 aaKnown RBP11.3□□□□□ -0.6
CLN3-261ENST00000637686 RIC8AQ9NPQ8 531 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 PCDHA6Q9UN73 950 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 PHF24Q9UPV7 400 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 Q9Y3F1 56 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 PCDHA8Q9Y5H6 950 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 FRMPD4Q14CM0 1322 aa11.3□□□□□ -0.6
CLN3-261ENST00000637686 A0A1W2PQ45 241 aaPredicted RBP11.29□□□□□ -0.6
CLN3-261ENST00000637686 A0A1W2PQY0 241 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 SPDYE3A6NKU9 549 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 NKRFO15226 690 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLN3-261ENST00000637686 RGS20O76081 388 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 ASGR1P07306 291 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 DDIT3P35638 169 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 ACLYP53396 1101 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 MRPS9P82933 396 aaKnown RBP11.29□□□□□ -0.6
CLN3-261ENST00000637686 ST3GAL1Q11201 340 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 FSCN1Q16658 493 aaKnown RBP11.29□□□□□ -0.6
CLN3-261ENST00000637686 LY6KQ17RY6 165 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 LRRC26Q2I0M4 334 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 CCDC62Q6P9F0 684 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 PCSK9Q8NBP7 692 aaKnown RBP11.29□□□□□ -0.6
CLN3-261ENST00000637686 OR6J1Q8NGC5 347 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 PGBD1Q96JS3 809 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 TMEM260Q9NX78 707 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 RTEL1Q9NZ71 1219 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 VPS54Q9P1Q0 977 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 MRVI1Q9Y6F6 885 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 STK36Q9NRP7 1315 aa11.29□□□□□ -0.6
CLN3-261ENST00000637686 ESYT2A0FGR8 921 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 MOXD2PA6NHM9 499 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 ADAMTS3O15072 1205 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 ZEB2O60315 1214 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 EVI5O60447 810 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 DEXIO95424 95 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 CTDNEP1O95476 244 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 PDCP20941 246 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 PCNX4Q63HM2 1172 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 SLC39A5Q6ZMH5 540 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 CCDC83Q8IWF9 413 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 FAM177A1Q8N128 213 aaPredicted RBP11.28□□□□□ -0.6
CLN3-261ENST00000637686 CCDC12Q8WUD4 166 aaPredicted RBP11.28□□□□□ -0.6
CLN3-261ENST00000637686 VTI1AQ96AJ9 217 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 ZMYND12Q9H0C1 365 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 GLT8D2Q9H1C3 349 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 C6orf50Q9HD87 102 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 DDX41Q9UJV9 622 aaKnown RBP11.28□□□□□ -0.6
CLN3-261ENST00000637686 SMC3Q9UQE7 1217 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 KIAA1217Q5T5P2 1943 aa11.28□□□□□ -0.6
CLN3-261ENST00000637686 SORBS3O60504 671 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 STAM2O75886 525 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 FOSP01100 380 aaPredicted RBP11.27□□□□□ -0.61
CLN3-261ENST00000637686 GH1P01241 217 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 GNA11P29992 359 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 CLK2P49760 499 aaKnown RBP11.27□□□□□ -0.61
CLN3-261ENST00000637686 SP2Q02086 613 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 JAKMIP3Q5VZ66 844 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 XRRA1Q6P2D8 792 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 KCNV1Q6PIU1 500 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 CXCL17Q6UXB2 119 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 TEX2Q8IWB9 1127 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 C7orf61Q8IZ16 206 aa11.27□□□□□ -0.61
CLN3-261ENST00000637686 NSUN7Q8NE18 718 aaKnown RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms