RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP2.74□□□□□ -1.97
SCN1A-215ENST00000637285 CROTQ9UKG9 612 aa2.74□□□□□ -1.97
SCN1A-215ENST00000637285 NPHP3-ACAD11A0A0J9YXS1 232 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 C7orf72A4D263 438 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 MEIS3P2A8K0S8 358 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 AURKAO14965 403 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 SGSM2O43147 1006 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 FOXS1O43638 330 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 VAMP4O75379 141 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 PAMP19021 973 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 ZNF165P49910 485 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 ATXN1P54253 815 aaKnown RBP2.73□□□□□ -1.97
SCN1A-215ENST00000637285 INHBCP55103 352 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 MLLT6P55198 1093 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-215ENST00000637285 NKX3-2P78367 333 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 APOBRQ0VD83 1088 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 NFATC3Q12968 1075 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 KRTAP15-1Q3LI76 137 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 ANKRD39Q53RE8 183 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 MILR1Q7Z6M3 343 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 REXO1Q8N1G1 1221 aaKnown RBP2.73□□□□□ -1.97
SCN1A-215ENST00000637285 AMER2Q8N7J2 671 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 SMARCC1Q92922 1105 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-215ENST00000637285 EXTL1Q92935 676 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 CLIC6Q96NY7 704 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 LRRC37BQ96QE4 947 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 BARX1Q9HBU1 254 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-215ENST00000637285 BTG4Q9NY30 223 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 MARCH2Q9P0N8 246 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 FTSJ1Q9UET6 329 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 VTI1BQ9UEU0 232 aa2.73□□□□□ -1.97
SCN1A-215ENST00000637285 ANKRD33BA6NCL7 494 aa2.72□□□□□ -1.97
SCN1A-215ENST00000637285 C2orf71A6NGG8 1288 aa2.72□□□□□ -1.97
SCN1A-215ENST00000637285 TCEAL1Q15170 157 aa2.72□□□□□ -1.97
SCN1A-215ENST00000637285 CSRP2Q16527 193 aa2.72□□□□□ -1.97
SCN1A-215ENST00000637285 INTS3Q68E01 1043 aaKnown RBP2.72□□□□□ -1.97
SCN1A-215ENST00000637285 TCTN3Q6NUS6 607 aa2.72□□□□□ -1.97
SCN1A-215ENST00000637285 TRMT10BQ6PF06 316 aaKnown RBP2.72□□□□□ -1.97
SCN1A-215ENST00000637285 TMC4Q7Z404 712 aa2.72□□□□□ -1.97
SCN1A-215ENST00000637285 FAM126BQ8IXS8 530 aa2.72□□□□□ -1.97
SCN1A-215ENST00000637285 KLHL36Q8N4N3 616 aa2.72□□□□□ -1.97
SCN1A-215ENST00000637285 GIMAP8Q8ND71 665 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-215ENST00000637285 PLEKHO2Q8TD55 490 aa2.72□□□□□ -1.97
SCN1A-215ENST00000637285 SEC14L1Q92503 715 aa2.72□□□□□ -1.97
SCN1A-215ENST00000637285 DLL4Q9NR61 685 aa2.72□□□□□ -1.97
SCN1A-215ENST00000637285 KCNQ5Q9NR82 932 aa2.72□□□□□ -1.97
SCN1A-215ENST00000637285 DIS3Q9Y2L1 958 aaKnown RBP2.72□□□□□ -1.97
SCN1A-215ENST00000637285 BACE2Q9Y5Z0 518 aa2.72□□□□□ -1.97
SCN1A-215ENST00000637285 SORBS3O60504 671 aa2.71□□□□□ -1.98
SCN1A-215ENST00000637285 CYP7B1O75881 506 aa2.71□□□□□ -1.98
SCN1A-215ENST00000637285 CR1LQ2VPA4 569 aa2.71□□□□□ -1.98
SCN1A-215ENST00000637285 ERMP1Q7Z2K6 904 aa2.71□□□□□ -1.98
SCN1A-215ENST00000637285 TEX2Q8IWB9 1127 aa2.71□□□□□ -1.98
SCN1A-215ENST00000637285 ZCCHC14Q8WYQ9 949 aaKnown RBP2.71□□□□□ -1.98
SCN1A-215ENST00000637285 NKD1Q969G9 470 aa2.71□□□□□ -1.98
SCN1A-215ENST00000637285 RNF34Q969K3 372 aa2.71□□□□□ -1.98
SCN1A-215ENST00000637285 LMF1Q96S06 567 aa2.71□□□□□ -1.98
SCN1A-215ENST00000637285 MRS2Q9HD23 443 aa2.71□□□□□ -1.98
SCN1A-215ENST00000637285 NGRNQ9NPE2 291 aaKnown RBP2.71□□□□□ -1.98
SCN1A-215ENST00000637285 TRBV23OR9-2A0A075B6M9 112 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 A0A087WZG4 1122 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 C22orf46C9J442 243 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 PLSCR1O15162 318 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 CNOT4O95628 575 aaKnown RBP2.7□□□□□ -1.98
SCN1A-215ENST00000637285 THBDP07204 575 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 ADH4P08319 380 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 C1SP09871 688 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 IL12RB1P42701 662 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 ZYXQ15942 572 aaKnown RBP2.7□□□□□ -1.98
SCN1A-215ENST00000637285 AGBL4Q5VU57 503 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 ADAT2Q7Z6V5 191 aaKnown RBP2.7□□□□□ -1.98
SCN1A-215ENST00000637285 RALYLQ86SE5 291 aaKnown RBP2.7□□□□□ -1.98
SCN1A-215ENST00000637285 SCUBE1Q8IWY4 988 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 DPF3Q92784 378 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 VOPP1Q96AW1 172 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 PLEKHG4BQ96PX9 1271 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 CLEC1BQ9P126 229 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 ADAMTS1Q9UHI8 967 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 PCSK5Q92824 1860 aa2.7□□□□□ -1.98
SCN1A-215ENST00000637285 CBFA2T2O43439 604 aa2.69□□□□□ -1.98
SCN1A-215ENST00000637285 COMTP21964 271 aa2.69□□□□□ -1.98
SCN1A-215ENST00000637285 AMPD2Q01433 879 aa2.69□□□□□ -1.98
SCN1A-215ENST00000637285 MBLAC2Q68D91 279 aa2.69□□□□□ -1.98
SCN1A-215ENST00000637285 TMC5Q6UXY8 1006 aa2.69□□□□□ -1.98
SCN1A-215ENST00000637285 UNC5AQ6ZN44 842 aa2.69□□□□□ -1.98
SCN1A-215ENST00000637285 TAX1BP1Q86VP1 789 aa2.69□□□□□ -1.98
SCN1A-215ENST00000637285 LDLRAD3Q86YD5 345 aa2.69□□□□□ -1.98
SCN1A-215ENST00000637285 C1orf210Q8IVY1 113 aa2.69□□□□□ -1.98
SCN1A-215ENST00000637285 NUDT10Q8NFP7 164 aa2.69□□□□□ -1.98
SCN1A-215ENST00000637285 NUDT11Q96G61 164 aa2.69□□□□□ -1.98
SCN1A-215ENST00000637285 AGAP2Q99490 1192 aa2.69□□□□□ -1.98
SCN1A-215ENST00000637285 SEC61A2Q9H9S3 476 aa2.69□□□□□ -1.98
SCN1A-215ENST00000637285 WHRNQ9P202 907 aa2.69□□□□□ -1.98
SCN1A-215ENST00000637285 TMEFF2Q9UIK5 374 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-215ENST00000637285 ADAM29Q9UKF5 820 aa2.69□□□□□ -1.98
SCN1A-215ENST00000637285 PPM1BO75688 479 aa2.68□□□□□ -1.98
SCN1A-215ENST00000637285 PLS3P13797 630 aa2.68□□□□□ -1.98
SCN1A-215ENST00000637285 ACO1P21399 889 aaKnown RBP2.68□□□□□ -1.98
SCN1A-215ENST00000637285 FPR2P25090 351 aa2.68□□□□□ -1.98
SCN1A-215ENST00000637285 PHF19Q5T6S3 580 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms