RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 CYP2W1Q8TAV3 490 aa23.37■■□□□ 1.33
CLN3-245ENST00000636172 ZFP91Q96JP5 570 aaPredicted RBP23.37■■□□□ 1.33
CLN3-245ENST00000636172 IWS1Q96ST2 819 aa23.37■■□□□ 1.33
CLN3-245ENST00000636172 IGLV3-22A0A075B6J6 115 aa23.36■■□□□ 1.33
CLN3-245ENST00000636172 TNPO2O14787 897 aaKnown RBP23.36■■□□□ 1.33
CLN3-245ENST00000636172 MYCLP12524 364 aaPredicted RBP23.36■■□□□ 1.33
CLN3-245ENST00000636172 CCND2P30279 289 aa23.36■■□□□ 1.33
CLN3-245ENST00000636172 ZNF76P36508 570 aa23.36■■□□□ 1.33
CLN3-245ENST00000636172 ATP2C1P98194 919 aaPredicted RBP23.36■■□□□ 1.33
CLN3-245ENST00000636172 SP3Q02447 781 aa23.36■■□□□ 1.33
CLN3-245ENST00000636172 PTGDRQ13258 359 aa23.36■■□□□ 1.33
CLN3-245ENST00000636172 XRRA1Q6P2D8 792 aa23.36■■□□□ 1.33
CLN3-245ENST00000636172 POTEDQ86YR6 584 aa23.36■■□□□ 1.33
CLN3-245ENST00000636172 TMEM87AQ8NBN3 555 aa23.36■■□□□ 1.33
CLN3-245ENST00000636172 LENG9Q96B70 501 aa23.36■■□□□ 1.33
CLN3-245ENST00000636172 ARHGAP39Q9C0H5 1083 aa23.36■■□□□ 1.33
CLN3-245ENST00000636172 TMEM60Q9H2L4 133 aa23.36■■□□□ 1.33
CLN3-245ENST00000636172 SPTLC2O15270 562 aa23.35■■□□□ 1.33
CLN3-245ENST00000636172 EDNRBP24530 442 aa23.35■■□□□ 1.33
CLN3-245ENST00000636172 FCGRTP55899 365 aa23.35■■□□□ 1.33
CLN3-245ENST00000636172 MAP2K1Q02750 393 aaPredicted RBP23.35■■□□□ 1.33
CLN3-245ENST00000636172 Q4G0T1 1027 aa23.35■■□□□ 1.33
CLN3-245ENST00000636172 CEP55Q53EZ4 464 aa23.35■■□□□ 1.33
CLN3-245ENST00000636172 PRR16Q569H4 304 aa23.35■■□□□ 1.33
CLN3-245ENST00000636172 KCNG4Q8TDN1 519 aa23.35■■□□□ 1.33
CLN3-245ENST00000636172 TRIM47Q96LD4 638 aa23.35■■□□□ 1.33
CLN3-245ENST00000636172 MORC2Q9Y6X9 1032 aaPredicted RBP23.35■■□□□ 1.33
CLN3-245ENST00000636172 ELP1O95163 1332 aa23.35■■□□□ 1.33
CLN3-245ENST00000636172 HSPA1AP0DMV8 641 aaKnown RBP23.34■■□□□ 1.33
CLN3-245ENST00000636172 HSPA1BP0DMV9 641 aaKnown RBP23.34■■□□□ 1.33
CLN3-245ENST00000636172 ITGB5P18084 799 aa23.34■■□□□ 1.33
CLN3-245ENST00000636172 MARCKSP29966 332 aaPredicted RBP23.34■■□□□ 1.33
CLN3-245ENST00000636172 PSMC4P43686 418 aa23.34■■□□□ 1.33
CLN3-245ENST00000636172 DPP9Q86TI2 863 aa23.34■■□□□ 1.33
CLN3-245ENST00000636172 USP6NLQ92738 828 aa23.34■■□□□ 1.33
CLN3-245ENST00000636172 UBIAD1Q9Y5Z9 338 aa23.34■■□□□ 1.33
CLN3-245ENST00000636172 GPR25O00155 361 aa23.33■■□□□ 1.33
CLN3-245ENST00000636172 MCM4P33991 863 aa23.33■■□□□ 1.33
CLN3-245ENST00000636172 CAP1Q01518 475 aa23.33■■□□□ 1.33
CLN3-245ENST00000636172 MAP2K5Q13163 448 aa23.33■■□□□ 1.33
CLN3-245ENST00000636172 MXRA8Q9BRK3 442 aa23.33■■□□□ 1.33
CLN3-245ENST00000636172 GJD2Q9UKL4 321 aa23.33■■□□□ 1.33
CLN3-245ENST00000636172 MCM3APO60318 1980 aa23.33■■□□□ 1.33
CLN3-245ENST00000636172 MEIS1O00470 390 aa23.33■■□□□ 1.32
CLN3-245ENST00000636172 PPP6R2O75170 966 aa23.33■■□□□ 1.32
CLN3-245ENST00000636172 CSPP1Q1MSJ5 1256 aa23.33■■□□□ 1.32
CLN3-245ENST00000636172 NIPA1Q7RTP0 329 aa23.33■■□□□ 1.32
CLN3-245ENST00000636172 SOCS4Q8WXH5 440 aa23.33■■□□□ 1.32
CLN3-245ENST00000636172 MTMR9Q96QG7 549 aa23.33■■□□□ 1.32
CLN3-245ENST00000636172 NUDT12Q9BQG2 462 aa23.33■■□□□ 1.32
CLN3-245ENST00000636172 KCNMB3Q9NPA1 279 aa23.33■■□□□ 1.32
CLN3-245ENST00000636172 DIS3Q9Y2L1 958 aaKnown RBP23.33■■□□□ 1.32
CLN3-245ENST00000636172 LOC102724159A0A0B4J2E5 919 aa23.32■■□□□ 1.32
CLN3-245ENST00000636172 LAD1O00515 517 aa23.32■■□□□ 1.32
CLN3-245ENST00000636172 OR52Z1P0C646 297 aa23.32■■□□□ 1.32
CLN3-245ENST00000636172 PWP2Q15269 919 aaKnown RBP23.32■■□□□ 1.32
CLN3-245ENST00000636172 STXBP2Q15833 593 aa23.32■■□□□ 1.32
CLN3-245ENST00000636172 CALCRLQ16602 461 aa23.32■■□□□ 1.32
CLN3-245ENST00000636172 COL13A1Q5TAT6 717 aaPredicted RBP23.32■■□□□ 1.32
CLN3-245ENST00000636172 ZNF467Q7Z7K2 595 aaPredicted RBP23.32■■□□□ 1.32
CLN3-245ENST00000636172 PLA2G4DQ86XP0 818 aa23.32■■□□□ 1.32
CLN3-245ENST00000636172 NPLOC4Q8TAT6 608 aa23.32■■□□□ 1.32
CLN3-245ENST00000636172 ETNPPLQ8TBG4 499 aa23.32■■□□□ 1.32
CLN3-245ENST00000636172 MORC4Q8TE76 937 aa23.32■■□□□ 1.32
CLN3-245ENST00000636172 FBXO2Q9UK22 296 aaPredicted RBP23.32■■□□□ 1.32
CLN3-245ENST00000636172 B4DLN1 442 aa23.31■■□□□ 1.32
CLN3-245ENST00000636172 PRPF40AO75400 957 aaKnown RBP23.31■■□□□ 1.32
CLN3-245ENST00000636172 STAM2O75886 525 aa23.31■■□□□ 1.32
CLN3-245ENST00000636172 HOXC6P09630 235 aa23.31■■□□□ 1.32
CLN3-245ENST00000636172 ME1P48163 572 aa23.31■■□□□ 1.32
CLN3-245ENST00000636172 SETQ01105 290 aaPredicted RBP23.31■■□□□ 1.32
CLN3-245ENST00000636172 PDE4DQ08499 809 aa23.31■■□□□ 1.32
CLN3-245ENST00000636172 HAS1Q92839 578 aa23.31■■□□□ 1.32
CLN3-245ENST00000636172 MAML3Q96JK9 1138 aa23.31■■□□□ 1.32
CLN3-245ENST00000636172 INPP4AQ96PE3 977 aaPredicted RBP23.31■■□□□ 1.32
CLN3-245ENST00000636172 MPHOSPH6Q99547 160 aaKnown RBP23.31■■□□□ 1.32
CLN3-245ENST00000636172 WDR11Q9BZH6 1224 aa23.31■■□□□ 1.32
CLN3-245ENST00000636172 JADE2Q9NQC1 790 aa23.31■■□□□ 1.32
CLN3-245ENST00000636172 PCDHA7Q9UN72 937 aa23.31■■□□□ 1.32
CLN3-245ENST00000636172 KIAA1217Q5T5P2 1943 aa23.3■■□□□ 1.32
CLN3-245ENST00000636172 ASB14A6NK59 587 aa23.3■■□□□ 1.32
CLN3-245ENST00000636172 GOLGA6L22H0YM25 854 aa23.3■■□□□ 1.32
CLN3-245ENST00000636172 EIF3JO75822 258 aaKnown RBP23.3■■□□□ 1.32
CLN3-245ENST00000636172 RGS20O76081 388 aa23.3■■□□□ 1.32
CLN3-245ENST00000636172 ARP10275 920 aa23.3■■□□□ 1.32
CLN3-245ENST00000636172 PRPHP41219 470 aa23.3■■□□□ 1.32
CLN3-245ENST00000636172 KIF22Q14807 665 aa23.3■■□□□ 1.32
CLN3-245ENST00000636172 IL17AQ16552 155 aa23.3■■□□□ 1.32
CLN3-245ENST00000636172 ARL6IP4Q66PJ3 421 aaKnown RBP23.3■■□□□ 1.32
CLN3-245ENST00000636172 BEGAINQ9BUH8 593 aa23.3■■□□□ 1.32
CLN3-245ENST00000636172 LMBRD1Q9NUN5 540 aa23.3■■□□□ 1.32
CLN3-245ENST00000636172 WBP1LQ9NX94 342 aa23.3■■□□□ 1.32
CLN3-245ENST00000636172 SLC5A4Q9NY91 659 aa23.3■■□□□ 1.32
CLN3-245ENST00000636172 SRPRBQ9Y5M8 271 aaKnown RBP23.3■■□□□ 1.32
CLN3-245ENST00000636172 MSH4O15457 936 aa23.29■■□□□ 1.32
CLN3-245ENST00000636172 RGS2P41220 211 aa23.29■■□□□ 1.32
CLN3-245ENST00000636172 GRIN1Q05586 938 aa23.29■■□□□ 1.32
CLN3-245ENST00000636172 AXDND1Q5T1B0 1012 aaPredicted RBP23.29■■□□□ 1.32
CLN3-245ENST00000636172 MAMDC4Q6UXC1 1216 aa23.29■■□□□ 1.32
CLN3-245ENST00000636172 KRI1Q8N9T8 703 aaKnown RBP23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms