RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.53■□□□□ 0.4
CPSF1-213ENST00000620219 ADKP55263 362 aaKnown RBP17.53■□□□□ 0.4
CPSF1-213ENST00000620219 NPY5RQ15761 445 aa17.53■□□□□ 0.4
CPSF1-213ENST00000620219 GPC2Q8N158 579 aa17.53■□□□□ 0.4
CPSF1-213ENST00000620219 TRIML1Q8N9V2 468 aa17.53■□□□□ 0.4
CPSF1-213ENST00000620219 CYP2W1Q8TAV3 490 aa17.53■□□□□ 0.4
CPSF1-213ENST00000620219 SLC10A4Q96EP9 437 aa17.53■□□□□ 0.4
CPSF1-213ENST00000620219 SNED1Q8TER0 1413 aa17.53■□□□□ 0.4
CPSF1-213ENST00000620219 TRIM49BA6NDI0 452 aa17.53■□□□□ 0.4
CPSF1-213ENST00000620219 CEP135Q66GS9 1140 aa17.53■□□□□ 0.4
CPSF1-213ENST00000620219 CTAGE1Q96RT6 745 aa17.53■□□□□ 0.4
CPSF1-213ENST00000620219 PANK4Q9NVE7 773 aa17.53■□□□□ 0.4
CPSF1-213ENST00000620219 WDR46O15213 610 aaKnown RBP17.52■□□□□ 0.4
CPSF1-213ENST00000620219 FGFR1OPO95684 399 aaKnown RBP17.52■□□□□ 0.4
CPSF1-213ENST00000620219 MRFAP1L1Q96HT8 127 aa17.52■□□□□ 0.4
CPSF1-213ENST00000620219 BHMT2Q9H2M3 363 aa17.52■□□□□ 0.4
CPSF1-213ENST00000620219 RGL1Q9NZL6 768 aa17.52■□□□□ 0.4
CPSF1-213ENST00000620219 SBF2Q86WG5 1849 aa17.52■□□□□ 0.4
CPSF1-213ENST00000620219 BICDL2A1A5D9 508 aa17.52■□□□□ 0.4
CPSF1-213ENST00000620219 PPP1R11O60927 126 aaPredicted RBP17.52■□□□□ 0.4
CPSF1-213ENST00000620219 GCNT3O95395 438 aa17.52■□□□□ 0.4
CPSF1-213ENST00000620219 MORC3Q14149 939 aa17.52■□□□□ 0.4
CPSF1-213ENST00000620219 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.52■□□□□ 0.4
CPSF1-213ENST00000620219 SCYL3Q8IZE3 742 aa17.52■□□□□ 0.4
CPSF1-213ENST00000620219 TEKT3Q9BXF9 490 aa17.52■□□□□ 0.4
CPSF1-213ENST00000620219 MRPL44Q9H9J2 332 aaKnown RBP17.52■□□□□ 0.4
CPSF1-213ENST00000620219 ESYT2A0FGR8 921 aa17.52■□□□□ 0.39
CPSF1-213ENST00000620219 PTPN14Q15678 1187 aa17.52■□□□□ 0.39
CPSF1-213ENST00000620219 MOB2Q70IA6 237 aa17.52■□□□□ 0.39
CPSF1-213ENST00000620219 IGSF22Q8N9C0 903 aa17.52■□□□□ 0.39
CPSF1-213ENST00000620219 DAGLBQ8NCG7 672 aa17.52■□□□□ 0.39
CPSF1-213ENST00000620219 GMCL1P1Q8NEA9 526 aa17.52■□□□□ 0.39
CPSF1-213ENST00000620219 IBSPP21815 317 aaPredicted RBP17.51■□□□□ 0.39
CPSF1-213ENST00000620219 SEPT14Q6ZU15 432 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 KDM3AQ9Y4C1 1321 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 C4AP0C0L4 1744 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 VCAM1P19320 739 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 MCTP2Q6DN12 878 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 ARMC9Q7Z3E5 817 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 FAM114A1Q8IWE2 563 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 LRRC8AQ8IWT6 810 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 MKL1Q969V6 931 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 GMLQ99445 158 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 TBC1D8BQ0IIM8 1120 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 NOC4LQ9BVI4 516 aaKnown RBP17.51■□□□□ 0.39
CPSF1-213ENST00000620219 CHD4Q14839 1912 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 NFIBO00712 420 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 PLA2G4BP0C869 781 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 FAM26FQ5R3K3 315 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 FKBP1CQ5VVH2 108 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 LPAR1Q92633 364 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 DDX12PQ92771 950 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 ADARB2Q9NS39 739 aaKnown RBP17.51■□□□□ 0.39
CPSF1-213ENST00000620219 TUBE1Q9UJT0 475 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 RABGAP1Q9Y3P9 1069 aa17.51■□□□□ 0.39
CPSF1-213ENST00000620219 CCDC88AQ3V6T2 1871 aa17.5■□□□□ 0.39
CPSF1-213ENST00000620219 CCDC169A6NNP5 214 aa17.5■□□□□ 0.39
CPSF1-213ENST00000620219 BAATQ14032 418 aaPredicted RBP17.5■□□□□ 0.39
CPSF1-213ENST00000620219 SPATA1Q5VX52 437 aa17.5■□□□□ 0.39
CPSF1-213ENST00000620219 C10orf71Q711Q0 1435 aa17.5■□□□□ 0.39
CPSF1-213ENST00000620219 LAMB2P55268 1798 aa17.5■□□□□ 0.39
CPSF1-213ENST00000620219 ARID5AQ03989 594 aa17.5■□□□□ 0.39
CPSF1-213ENST00000620219 TAF1LQ8IZX4 1826 aa17.5■□□□□ 0.39
CPSF1-213ENST00000620219 ZNF500O60304 480 aaPredicted RBP17.5■□□□□ 0.39
CPSF1-213ENST00000620219 DCAF17Q5H9S7 520 aaPredicted RBP17.5■□□□□ 0.39
CPSF1-213ENST00000620219 RDH13Q8NBN7 331 aa17.5■□□□□ 0.39
CPSF1-213ENST00000620219 CCDC150Q8NCX0 1101 aa17.5■□□□□ 0.39
CPSF1-213ENST00000620219 FCER1AP12319 257 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 MAP3K9P80192 1104 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 COG2Q14746 738 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 MAP1SQ66K74 1059 aaPredicted RBP17.49■□□□□ 0.39
CPSF1-213ENST00000620219 LY75O60449 1722 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 PRCPP42785 496 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 BACE1P56817 501 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 TDRD12Q587J7 1177 aaKnown RBP17.49■□□□□ 0.39
CPSF1-213ENST00000620219 ZNF658Q5TYW1 1059 aaPredicted RBP17.49■□□□□ 0.39
CPSF1-213ENST00000620219 BANK1Q8NDB2 785 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 BICD1Q96G01 975 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 KCNJ18B7U540 433 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 BMP6P22004 513 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 EPHX2P34913 555 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 USP11P51784 963 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 KCNJ12Q14500 433 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 IL17AQ16552 155 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 SCLT1Q96NL6 688 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 IVNS1ABPQ9Y6Y0 642 aa17.49■□□□□ 0.39
CPSF1-213ENST00000620219 IGKV6D-41A0A0C4DH26 115 aa17.48■□□□□ 0.39
CPSF1-213ENST00000620219 KIAA1524Q8TCG1 905 aa17.48■□□□□ 0.39
CPSF1-213ENST00000620219 HOXC10Q9NYD6 342 aa17.48■□□□□ 0.39
CPSF1-213ENST00000620219 NPHP3-ACAD11A0A0J9YXS1 232 aa17.48■□□□□ 0.39
CPSF1-213ENST00000620219 CEP55Q53EZ4 464 aa17.48■□□□□ 0.39
CPSF1-213ENST00000620219 MYOCDQ8IZQ8 938 aa17.48■□□□□ 0.39
CPSF1-213ENST00000620219 TNFRSF25Q93038 417 aa17.48■□□□□ 0.39
CPSF1-213ENST00000620219 SEPT11Q9NVA2 429 aaKnown RBP17.48■□□□□ 0.39
CPSF1-213ENST00000620219 FAM170AA1A519 330 aa17.48■□□□□ 0.39
CPSF1-213ENST00000620219 IPO5O00410 1097 aaKnown RBP17.48■□□□□ 0.39
CPSF1-213ENST00000620219 USO1O60763 962 aaKnown RBP17.48■□□□□ 0.39
CPSF1-213ENST00000620219 NPM3O75607 178 aaKnown RBP17.48■□□□□ 0.39
CPSF1-213ENST00000620219 ARHGAP29Q52LW3 1261 aa17.48■□□□□ 0.39
CPSF1-213ENST00000620219 IKBKBO14920 756 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms