RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 CYP27A1Q02318 531 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 NFRKBQ6P4R8 1299 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 MAATS1Q7Z4T9 603 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 RASSF8Q8NHQ8 419 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 PIK3R5Q8WYR1 880 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 NLRP3Q96P20 1036 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 BLZF1Q9H2G9 400 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 TMBIM4Q9HC24 238 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 PLCB1Q9NQ66 1216 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 RBM12Q9NTZ6 932 aaKnown RBP11.95□□□□□ -0.5
UPF3A-212ENST00000619079 PCDHA13Q9Y5I0 950 aa11.95□□□□□ -0.5
UPF3A-212ENST00000619079 GRID2IPA4D2P6 1211 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 KLHL33A6NCF5 533 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 DNM1LO00429 736 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 SSBP05455 408 aaKnown RBP eCLIP11.94□□□□□ -0.5
UPF3A-212ENST00000619079 PAEPP09466 180 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 ATP2C1P98194 919 aaPredicted RBP11.94□□□□□ -0.5
UPF3A-212ENST00000619079 CTDSPL2Q05D32 466 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 E2F5Q15329 346 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 CCDC47Q96A33 483 aaKnown RBP11.94□□□□□ -0.5
UPF3A-212ENST00000619079 SEC16BQ96JE7 1060 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 TRIM47Q96LD4 638 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 SH3GL3Q99963 347 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 FHDC1Q9C0D6 1143 aaPredicted RBP11.94□□□□□ -0.5
UPF3A-212ENST00000619079 EPB41L5Q9HCM4 733 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 AGPAT5Q9NUQ2 364 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 SWAP70Q9UH65 585 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 UTRNP46939 3433 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 LCA5LO95447 670 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 MYL1P05976 194 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 PDE6BP35913 854 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 CARSP49589 748 aaKnown RBP11.94□□□□□ -0.5
UPF3A-212ENST00000619079 TBC1D8BQ0IIM8 1120 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 WTAPQ15007 396 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 CDC37Q16543 378 aaPredicted RBP11.94□□□□□ -0.5
UPF3A-212ENST00000619079 RNF10Q8N5U6 811 aaKnown RBP11.94□□□□□ -0.5
UPF3A-212ENST00000619079 IFT81Q8WYA0 676 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 TUBGCP2Q9BSJ2 902 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 BRIP1Q9BX63 1249 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 ZSWIM5Q9P217 1185 aa11.94□□□□□ -0.5
UPF3A-212ENST00000619079 ANKRD36CQ5JPF3 1778 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 B4DLN1 442 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 PATL2C9JE40 543 aaKnown RBP11.93□□□□□ -0.5
UPF3A-212ENST00000619079 BUB1BO60566 1050 aaPredicted RBP11.93□□□□□ -0.5
UPF3A-212ENST00000619079 MOCS3O95396 460 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 GLI1P08151 1106 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 HPDP32754 393 aaPredicted RBP11.93□□□□□ -0.5
UPF3A-212ENST00000619079 GCKP35557 465 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 GUCY2DQ02846 1103 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 RIPK1Q13546 671 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 KCNB1Q14721 858 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 FKBP15Q5T1M5 1219 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 STAMQ92783 540 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 CUL5Q93034 780 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 LRRC45Q96CN5 670 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 PCMTD1Q96MG8 357 aaPredicted RBP11.93□□□□□ -0.5
UPF3A-212ENST00000619079 NOX5Q96PH1 765 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 CCDC85AQ96PX6 553 aaPredicted RBP11.93□□□□□ -0.5
UPF3A-212ENST00000619079 EBF2Q9HAK2 575 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 HOMER3Q9NSC5 361 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 SLC12A6Q9UHW9 1150 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 PLAAQ9Y263 795 aa11.93□□□□□ -0.5
UPF3A-212ENST00000619079 ATP6V1G2O95670 118 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 GSTA1P08263 222 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 ADORA1P30542 326 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 BIRC2Q13490 618 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 SCARF1Q14162 830 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 CCDC57Q2TAC2 916 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 TTC38Q5R3I4 469 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 HVCN1Q96D96 273 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 ERGIC2Q96RQ1 377 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 NOD2Q9HC29 1040 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 PLAGL2Q9UPG8 496 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 GDAQ9Y2T3 454 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 LEMD3Q9Y2U8 911 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 RIPOR2Q9Y4F9 1068 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 H0YIN7 160 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 PJA2O43164 708 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 PDE8AO60658 829 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 FAM153BP0C7A2 387 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 IBSPP21815 317 aaPredicted RBP11.92□□□□□ -0.5
UPF3A-212ENST00000619079 TRAPPC10P48553 1259 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 KIF11P52732 1056 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 TNNC1P63316 161 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 FAM153CQ494X1 144 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 AKNAD1Q5T1N1 836 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 AP1ARQ63HQ0 302 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 C2CD5Q86YS7 1000 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 FANCBQ8NB91 859 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 NKX2-3Q8TAU0 364 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 RPGRQ92834 1020 aaKnown RBP11.92□□□□□ -0.5
UPF3A-212ENST00000619079 TATDN2Q93075 761 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 DHTKD1Q96HY7 919 aaPredicted RBP11.92□□□□□ -0.5
UPF3A-212ENST00000619079 ZNF594Q96JF6 807 aaPredicted RBP11.92□□□□□ -0.5
UPF3A-212ENST00000619079 ZNF512BQ96KM6 892 aaPredicted RBP11.92□□□□□ -0.5
UPF3A-212ENST00000619079 PHF20Q9BVI0 1012 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 MLXIPQ9HAP2 919 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 FAM153AQ9UHL3 310 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 CD2APQ9Y5K6 639 aa11.92□□□□□ -0.5
UPF3A-212ENST00000619079 BICDL2A1A5D9 508 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms