RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TPD52P55327 224 aaPredicted RBP15.29■□□□□ 0.04
CPSF1-212ENST00000616140 MYL7Q01449 175 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 CYB5R4Q7L1T6 521 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 DGKHQ86XP1 1220 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 TBC1D31Q96DN5 1066 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 MLXIPQ9HAP2 919 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 ATP8A1Q9Y2Q0 1164 aa15.29■□□□□ 0.04
CPSF1-212ENST00000616140 CLTAP09496 248 aa15.28■□□□□ 0.04
CPSF1-212ENST00000616140 PTK2Q05397 1052 aa15.28■□□□□ 0.04
CPSF1-212ENST00000616140 CCDC38Q502W7 563 aa15.28■□□□□ 0.04
CPSF1-212ENST00000616140 KAZNQ674X7 775 aa15.28■□□□□ 0.04
CPSF1-212ENST00000616140 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.28■□□□□ 0.04
CPSF1-212ENST00000616140 THAP9Q9H5L6 903 aa15.28■□□□□ 0.04
CPSF1-212ENST00000616140 IFT88Q13099 833 aa15.28■□□□□ 0.04
CPSF1-212ENST00000616140 TMTC3Q6ZXV5 915 aa15.28■□□□□ 0.04
CPSF1-212ENST00000616140 NT5C1BQ96P26 610 aa15.28■□□□□ 0.04
CPSF1-212ENST00000616140 ABCB6Q9NP58 842 aa15.28■□□□□ 0.04
CPSF1-212ENST00000616140 INTS9Q9NV88 658 aaKnown RBP15.28■□□□□ 0.04
CPSF1-212ENST00000616140 NOD1Q9Y239 953 aa15.28■□□□□ 0.04
CPSF1-212ENST00000616140 ATF2P15336 505 aa15.28■□□□□ 0.04
CPSF1-212ENST00000616140 YARSP54577 528 aaKnown RBP15.28■□□□□ 0.04
CPSF1-212ENST00000616140 CLRN2A0PK11 232 aa15.27■□□□□ 0.04
CPSF1-212ENST00000616140 GFPT2O94808 682 aa15.27■□□□□ 0.04
CPSF1-212ENST00000616140 GDF11O95390 407 aa15.27■□□□□ 0.04
CPSF1-212ENST00000616140 YWHAEP62258 255 aaKnown RBP15.27■□□□□ 0.04
CPSF1-212ENST00000616140 CUL4BQ13620 913 aa15.27■□□□□ 0.04
CPSF1-212ENST00000616140 UBE2SQ16763 222 aa15.27■□□□□ 0.04
CPSF1-212ENST00000616140 ATP2A3Q93084 1043 aa15.27■□□□□ 0.04
CPSF1-212ENST00000616140 PAGR1Q9BTK6 254 aa15.27■□□□□ 0.04
CPSF1-212ENST00000616140 TYW1Q9NV66 732 aaKnown RBP15.27■□□□□ 0.04
CPSF1-212ENST00000616140 HADHQ16836 314 aaKnown RBP15.27■□□□□ 0.04
CPSF1-212ENST00000616140 SPATS2Q86XZ4 545 aaKnown RBP15.27■□□□□ 0.04
CPSF1-212ENST00000616140 MCF2L2Q86YR7 1114 aa15.27■□□□□ 0.04
CPSF1-212ENST00000616140 ZBTB8OSQ8IWT0 167 aa15.27■□□□□ 0.04
CPSF1-212ENST00000616140 MICAL1Q8TDZ2 1067 aa15.27■□□□□ 0.04
CPSF1-212ENST00000616140 TMOD1P28289 359 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 PRDX5P30044 214 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 MRPS25P82663 173 aaKnown RBP15.27■□□□□ 0.03
CPSF1-212ENST00000616140 BFSP1Q12934 665 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 MB21D2Q8IYB1 491 aaPredicted RBP15.27■□□□□ 0.03
CPSF1-212ENST00000616140 STAG1Q8WVM7 1258 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 RUNDC3BQ96NL0 473 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 ZNF577Q9BSK1 485 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 ANKFY1Q9P2R3 1169 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 NEDD4P46934 1319 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 TMEM191BP0C7N4 346 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 P4HA1P13674 534 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 SLC7A5Q01650 507 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 ANKRD35Q8N283 1001 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 MB21D1Q8N884 522 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 OXER1Q8TDS5 423 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 EXOC4Q96A65 974 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 VCX3BQ9H321 246 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 CPVLQ9H3G5 476 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 RRP15Q9Y3B9 282 aaKnown RBP15.27■□□□□ 0.03
CPSF1-212ENST00000616140 PNPLA6Q8IY17 1366 aa15.27■□□□□ 0.03
CPSF1-212ENST00000616140 HIP1RO75146 1068 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 SERPINB2P05120 415 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 TOGARAM2Q6ZUX3 1019 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 NLGN1Q8N2Q7 840 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 ZNF653Q96CK0 615 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 GCNT4Q9P109 453 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 RNF14Q9UBS8 474 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 BBOX1O75936 387 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 RNF8O76064 485 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 PLA2G4BP0C869 781 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 CDC27P30260 824 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 MAP2K2P36507 400 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 POLGP54098 1239 aaPredicted RBP15.26■□□□□ 0.03
CPSF1-212ENST00000616140 PPP2R5CQ13362 524 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 DBNDD1Q9H9R9 158 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 PREX2Q70Z35 1606 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 SETD1BQ9UPS6 1966 aaKnown RBP15.26■□□□□ 0.03
CPSF1-212ENST00000616140 H0YCG3 227 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 DHX9Q08211 1270 aaKnown RBP15.26■□□□□ 0.03
CPSF1-212ENST00000616140 RNF10Q8N5U6 811 aaKnown RBP15.26■□□□□ 0.03
CPSF1-212ENST00000616140 CCT6BQ92526 530 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 OSBPL5Q9H0X9 879 aaPredicted RBP15.26■□□□□ 0.03
CPSF1-212ENST00000616140 PCIF1Q9H4Z3 704 aa15.26■□□□□ 0.03
CPSF1-212ENST00000616140 TXNDC9O14530 226 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 GMNNO75496 209 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 CYP2D6P10635 497 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 GAP43P17677 238 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 POLR2BP30876 1174 aaKnown RBP15.25■□□□□ 0.03
CPSF1-212ENST00000616140 PHBP35232 272 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 MMS19Q96T76 1030 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 BRIP1Q9BX63 1249 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 FAM114A2Q9NRY5 505 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 PCDHA13Q9Y5I0 950 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 TRIM49BA6NDI0 452 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 USP27XA6NNY8 438 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 GIPC1O14908 333 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 CRCPO75575 148 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 BMP3P12645 472 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 CDK8P49336 464 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 ALKBH5Q6P6C2 394 aaKnown RBP15.25■□□□□ 0.03
CPSF1-212ENST00000616140 CCDC125Q86Z20 511 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 WDR11Q9BZH6 1224 aa15.25■□□□□ 0.03
CPSF1-212ENST00000616140 SRP68Q9UHB9 627 aaKnown RBP15.25■□□□□ 0.03
CPSF1-212ENST00000616140 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms