RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.86□□□□□ -0.192e-7■■■■■ 129.7
LIG1-221ENST00000613670 TCEAL9Q9UHQ7 104 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 PCDHA6Q9UN73 950 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 PCDHA8Q9Y5H6 950 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 GOLGA6L10A0A0M3HER8 536 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 RHOBTB3O94955 611 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 SYF2O95926 243 aaKnown RBP13.86□□□□□ -0.19
LIG1-221ENST00000613670 FKBP3Q00688 224 aaKnown RBP13.86□□□□□ -0.19
LIG1-221ENST00000613670 APBA1Q02410 837 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 PAPD7Q5XG87 772 aaKnown RBP13.86□□□□□ -0.19
LIG1-221ENST00000613670 RUFY4Q6ZNE9 571 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 FAM84BQ96KN1 310 aaPredicted RBP13.86□□□□□ -0.19
LIG1-221ENST00000613670 AK8Q96MA6 479 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 MYCBPQ99417 103 aaPredicted RBP13.86□□□□□ -0.19
LIG1-221ENST00000613670 GOLPH3Q9H4A6 298 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 PCDHA12Q9UN75 941 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 PLAAQ9Y263 795 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.86□□□□□ -0.19
LIG1-221ENST00000613670 ZSCAN5CA6NGD5 496 aaPredicted RBP13.86□□□□□ -0.19
LIG1-221ENST00000613670 EIF3HO15372 352 aaKnown RBP eCLIP13.86□□□□□ -0.19
LIG1-221ENST00000613670 MYL1P05976 194 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 KCNB1Q14721 858 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 MCTP2Q6DN12 878 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 BRINP3Q76B58 766 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 CCDC26Q8TAB7 109 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 LMBR1Q8WVP7 490 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 CTNNBL1Q8WYA6 563 aaPredicted RBP13.86□□□□□ -0.19
LIG1-221ENST00000613670 DDX12PQ92771 950 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 ZIM3Q96PE6 472 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 TMEM47Q9BQJ4 181 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 MINPP1Q9UNW1 487 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 KIAA1024Q9UPX6 916 aa13.86□□□□□ -0.19
LIG1-221ENST00000613670 E2F5Q15329 346 aa13.85□□□□□ -0.19
LIG1-221ENST00000613670 LLGL1Q15334 1064 aa13.85□□□□□ -0.19
LIG1-221ENST00000613670 TTI2Q6NXR4 508 aa13.85□□□□□ -0.19
LIG1-221ENST00000613670 APTXQ7Z2E3 356 aaKnown RBP13.85□□□□□ -0.19
LIG1-221ENST00000613670 RPGRQ92834 1020 aaKnown RBP13.85□□□□□ -0.19
LIG1-221ENST00000613670 MTRQ99707 1265 aa13.85□□□□□ -0.19
LIG1-221ENST00000613670 SH2D4AQ9H788 454 aa13.85□□□□□ -0.19
LIG1-221ENST00000613670 EZRP15311 586 aaKnown RBP13.85□□□□□ -0.19
LIG1-221ENST00000613670 SSR1P43307 286 aaKnown RBP13.85□□□□□ -0.19
LIG1-221ENST00000613670 WDR59Q6PJI9 974 aa13.85□□□□□ -0.19
LIG1-221ENST00000613670 BAIAP2L1Q9UHR4 511 aa13.85□□□□□ -0.19
LIG1-221ENST00000613670 LRRC10BA6NIK2 292 aa13.85□□□□□ -0.19
LIG1-221ENST00000613670 LAD1O00515 517 aa13.85□□□□□ -0.19
LIG1-221ENST00000613670 AMPD2Q01433 879 aa13.85□□□□□ -0.19
LIG1-221ENST00000613670 SF3B2Q13435 895 aaKnown RBP13.85□□□□□ -0.19
LIG1-221ENST00000613670 UBE2SQ16763 222 aa13.85□□□□□ -0.19
LIG1-221ENST00000613670 COL4A3BPQ9Y5P4 624 aa13.85□□□□□ -0.19
LIG1-221ENST00000613670 MRPL12P52815 198 aaKnown RBP13.84□□□□□ -0.19
LIG1-221ENST00000613670 SYCP3Q8IZU3 236 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 IQCDQ96DY2 449 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 NOVA2Q9UNW9 492 aaKnown RBP13.84□□□□□ -0.19
LIG1-221ENST00000613670 UTP11Q9Y3A2 253 aaKnown RBP13.84□□□□□ -0.19
LIG1-221ENST00000613670 NFAT5O94916 1531 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 IL17AQ16552 155 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 FAM83BQ5T0W9 1011 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 GALNT17Q6IS24 598 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 DGKHQ86XP1 1220 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 ZNF34Q8IZ26 560 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 OR2W6PQ8NHA6 318 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 SH3RF3Q8TEJ3 882 aaPredicted RBP13.84□□□□□ -0.19
LIG1-221ENST00000613670 GJA10Q969M2 543 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 RIC1Q4ADV7 1423 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 GSTTP1A0A1W2PQM5 241 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 CCSER1Q9C0I3 900 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 MAGEF1Q9HAY2 307 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 ARMCX3Q9UH62 379 aaPredicted RBP13.84□□□□□ -0.19
LIG1-221ENST00000613670 FLOT1O75955 427 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 KLRK1P26718 216 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 ZNF804AQ7Z570 1209 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 CACNA2D3Q8IZS8 1091 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 RDH13Q8NBN7 331 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 WDR66Q8TBY9 1149 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 NSUN4Q96CB9 384 aaKnown RBP13.84□□□□□ -0.19
LIG1-221ENST00000613670 LZTS2Q9BRK4 669 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 RIOK1Q9BRS2 568 aaKnown RBP13.84□□□□□ -0.19
LIG1-221ENST00000613670 DDX47Q9H0S4 455 aaKnown RBP13.84□□□□□ -0.19
LIG1-221ENST00000613670 NUCKS1Q9H1E3 243 aaKnown RBP13.84□□□□□ -0.19
LIG1-221ENST00000613670 ARHGAP20Q9P2F6 1191 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 ATP8A1Q9Y2Q0 1164 aa13.84□□□□□ -0.19
LIG1-221ENST00000613670 ZNF804BA4D1E1 1349 aa13.83□□□□□ -0.19
LIG1-221ENST00000613670 SETD1AO15047 1707 aaKnown RBP13.83□□□□□ -0.2
LIG1-221ENST00000613670 LOC102724159A0A0B4J2E5 919 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 MYO1FO00160 1098 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 RIMBP2O15034 1052 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 TDP2O95551 362 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 NR2F2P24468 414 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 SLC16A2P36021 539 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 PWP2Q15269 919 aaKnown RBP13.83□□□□□ -0.2
LIG1-221ENST00000613670 IRF2BP1Q8IU81 584 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 ANKS4BQ8N8V4 417 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 IFNAR2P48551 515 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 CYP4A11Q02928 519 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 ACTN3Q08043 901 aaPredicted RBP13.83□□□□□ -0.2
LIG1-221ENST00000613670 ARHGAP44Q17R89 818 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 DDX42Q86XP3 938 aaKnown RBP eCLIP13.83□□□□□ -0.2
LIG1-221ENST00000613670 BARHL2Q9NY43 387 aa13.83□□□□□ -0.2
LIG1-221ENST00000613670 DDX25Q9UHL0 483 aaKnown RBP13.83□□□□□ -0.2
LIG1-221ENST00000613670 FRMD3A2A2Y4 597 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms