RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 DDX41Q9UJV9 622 aaKnown RBP30.11■■■□□ 2.41
PNKP-216ENST00000601816 KIAA1217Q5T5P2 1943 aa30.11■■■□□ 2.41
PNKP-216ENST00000601816 SUPT20HL2P0C7V6 817 aa30.1■■■□□ 2.41
PNKP-216ENST00000601816 SMAD3P84022 425 aaKnown RBP30.1■■■□□ 2.41
PNKP-216ENST00000601816 NBPF20Q3BBV1 942 aa30.1■■■□□ 2.41
PNKP-216ENST00000601816 VSIG10LQ86VR7 867 aa30.1■■■□□ 2.41
PNKP-216ENST00000601816 RAB11FIP4Q86YS3 637 aa30.1■■■□□ 2.41
PNKP-216ENST00000601816 SRBD1Q8N5C6 995 aaKnown RBP30.1■■■□□ 2.41
PNKP-216ENST00000601816 IL31RAQ8NI17 732 aa30.1■■■□□ 2.41
PNKP-216ENST00000601816 BUD13Q9BRD0 619 aaKnown RBP eCLIP30.1■■■□□ 2.411e-8■■□□□ 13.2
PNKP-216ENST00000601816 NOC4LQ9BVI4 516 aaKnown RBP30.1■■■□□ 2.41
PNKP-216ENST00000601816 MMP3P08254 477 aa30.09■■■□□ 2.41
PNKP-216ENST00000601816 CCND2P30279 289 aa30.09■■■□□ 2.41
PNKP-216ENST00000601816 NFRKBQ6P4R8 1299 aa30.09■■■□□ 2.41
PNKP-216ENST00000601816 SGMS1Q86VZ5 419 aa30.09■■■□□ 2.41
PNKP-216ENST00000601816 TRMT13Q9NUP7 481 aaKnown RBP30.09■■■□□ 2.41
PNKP-216ENST00000601816 SCN10AQ9Y5Y9 1956 aa30.08■■■□□ 2.41
PNKP-216ENST00000601816 UMODL1Q5DID0 1318 aa30.08■■■□□ 2.41
PNKP-216ENST00000601816 NEFLP07196 543 aa30.08■■■□□ 2.41
PNKP-216ENST00000601816 TSGA10IPQ3SY00 556 aa30.08■■■□□ 2.41
PNKP-216ENST00000601816 KCNV1Q6PIU1 500 aa30.08■■■□□ 2.41
PNKP-216ENST00000601816 SYNE3Q6ZMZ3 975 aa30.08■■■□□ 2.41
PNKP-216ENST00000601816 MICU3Q86XE3 530 aa30.08■■■□□ 2.41
PNKP-216ENST00000601816 EMID1Q96A84 441 aaPredicted RBP30.08■■■□□ 2.41
PNKP-216ENST00000601816 LAMC2Q13753 1193 aa30.07■■■□□ 2.4
PNKP-216ENST00000601816 KRT32Q14532 448 aa30.07■■■□□ 2.4
PNKP-216ENST00000601816 TMEM240Q5SV17 173 aa30.07■■■□□ 2.4
PNKP-216ENST00000601816 ZNF697Q5TEC3 545 aa30.07■■■□□ 2.4
PNKP-216ENST00000601816 PSRC1Q6PGN9 363 aaPredicted RBP30.07■■■□□ 2.4
PNKP-216ENST00000601816 RASEFQ8IZ41 740 aa30.07■■■□□ 2.4
PNKP-216ENST00000601816 CMTR1Q8N1G2 835 aaKnown RBP30.07■■■□□ 2.4
PNKP-216ENST00000601816 FANCBQ8NB91 859 aa30.07■■■□□ 2.4
PNKP-216ENST00000601816 IL23AQ9NPF7 189 aa30.07■■■□□ 2.4
PNKP-216ENST00000601816 RGS20O76081 388 aa30.06■■■□□ 2.4
PNKP-216ENST00000601816 ACRP10323 421 aa30.06■■■□□ 2.4
PNKP-216ENST00000601816 CASTP20810 708 aaKnown RBP30.06■■■□□ 2.4
PNKP-216ENST00000601816 CCL23P55773 120 aa30.06■■■□□ 2.4
PNKP-216ENST00000601816 CHMP4BP1P59074 171 aa30.06■■■□□ 2.4
PNKP-216ENST00000601816 PTPN11Q06124 597 aaPredicted RBP30.06■■■□□ 2.4
PNKP-216ENST00000601816 C16orf59Q7L2K0 433 aa30.06■■■□□ 2.4
PNKP-216ENST00000601816 DHX32Q7L7V1 743 aaKnown RBP30.06■■■□□ 2.4
PNKP-216ENST00000601816 DHX37Q8IY37 1157 aaKnown RBP30.06■■■□□ 2.4
PNKP-216ENST00000601816 PPP1R13LQ8WUF5 828 aa30.06■■■□□ 2.4
PNKP-216ENST00000601816 CUL5Q93034 780 aa30.06■■■□□ 2.4
PNKP-216ENST00000601816 FRMPD4Q14CM0 1322 aa30.05■■■□□ 2.4
PNKP-216ENST00000601816 CYP2C9P11712 490 aa30.05■■■□□ 2.4
PNKP-216ENST00000601816 DGKDQ16760 1214 aa30.05■■■□□ 2.4
PNKP-216ENST00000601816 TMTC3Q6ZXV5 915 aa30.05■■■□□ 2.4
PNKP-216ENST00000601816 SMARCC2Q8TAQ2 1214 aa30.05■■■□□ 2.4
PNKP-216ENST00000601816 TCEANC2Q96MN5 208 aa30.05■■■□□ 2.4
PNKP-216ENST00000601816 WNT8AQ9H1J5 351 aa30.05■■■□□ 2.4
PNKP-216ENST00000601816 LAMA2P24043 3122 aaKnown RBP30.05■■■□□ 2.4
PNKP-216ENST00000601816 EXOSC10Q01780 885 aaKnown RBP30.04■■■□□ 2.4
PNKP-216ENST00000601816 ADCK5Q3MIX3 580 aa30.04■■■□□ 2.4
PNKP-216ENST00000601816 APOA5Q6Q788 366 aa30.04■■■□□ 2.4
PNKP-216ENST00000601816 ZNF365Q70YC5 407 aa30.04■■■□□ 2.4
PNKP-216ENST00000601816 PPTC7Q8NI37 304 aa30.04■■■□□ 2.4
PNKP-216ENST00000601816 ZFP91Q96JP5 570 aaPredicted RBP30.04■■■□□ 2.4
PNKP-216ENST00000601816 FAM161BQ96MY7 647 aa30.04■■■□□ 2.4
PNKP-216ENST00000601816 CCDC82Q8N4S0 544 aa30.03■■■□□ 2.4
PNKP-216ENST00000601816 STXBP5LQ9Y2K9 1186 aa30.03■■■□□ 2.4
PNKP-216ENST00000601816 HSFX4A0A1B0GTS1 333 aaPredicted RBP30.02■■■□□ 2.4
PNKP-216ENST00000601816 HSFX3A0A1B0GWH4 333 aaPredicted RBP30.02■■■□□ 2.4
PNKP-216ENST00000601816 PIK3CDO00329 1044 aa30.02■■■□□ 2.4
PNKP-216ENST00000601816 TGFB3P10600 412 aa30.02■■■□□ 2.4
PNKP-216ENST00000601816 GNPTABQ3T906 1256 aa30.02■■■□□ 2.4
PNKP-216ENST00000601816 USP17L6PQ6QN14 398 aa30.02■■■□□ 2.4
PNKP-216ENST00000601816 NOD1Q9Y239 953 aa30.02■■■□□ 2.4
PNKP-216ENST00000601816 STAM2O75886 525 aa30.01■■■□□ 2.39
PNKP-216ENST00000601816 GGPS1O95749 300 aa30.01■■■□□ 2.39
PNKP-216ENST00000601816 HMGB1P09429 215 aaKnown RBP30.01■■■□□ 2.39
PNKP-216ENST00000601816 UBA1P22314 1058 aaKnown RBP30.01■■■□□ 2.39
PNKP-216ENST00000601816 CELF3Q5SZQ8 465 aaKnown RBP30.01■■■□□ 2.39
PNKP-216ENST00000601816 MYSM1Q5VVJ2 828 aa30.01■■■□□ 2.39
PNKP-216ENST00000601816 KAT2BQ92831 832 aa30.01■■■□□ 2.39
PNKP-216ENST00000601816 RBM28Q9NW13 759 aaKnown RBP30.01■■■□□ 2.39
PNKP-216ENST00000601816 hCG_1642624A0A1W2PR95 340 aa30■■■□□ 2.39
PNKP-216ENST00000601816 MEIS2O14770 477 aa30■■■□□ 2.39
PNKP-216ENST00000601816 ZBTB43O43298 467 aa30■■■□□ 2.39
PNKP-216ENST00000601816 SORBS3O60504 671 aa30■■■□□ 2.39
PNKP-216ENST00000601816 MRPS9P82933 396 aaKnown RBP30■■■□□ 2.39
PNKP-216ENST00000601816 RASIP1Q5U651 963 aa30■■■□□ 2.39
PNKP-216ENST00000601816 RPUSD2Q8IZ73 545 aaKnown RBP30■■■□□ 2.39
PNKP-216ENST00000601816 SCLYQ96I15 445 aa30■■■□□ 2.39
PNKP-216ENST00000601816 SPATA33Q96N06 139 aa30■■■□□ 2.39
PNKP-216ENST00000601816 GUCD1Q96NT3 240 aa30■■■□□ 2.39
PNKP-216ENST00000601816 KATNAL1Q9BW62 490 aa30■■■□□ 2.39
PNKP-216ENST00000601816 MTIF3Q9H2K0 278 aaKnown RBP30■■■□□ 2.39
PNKP-216ENST00000601816 BRPF3Q9ULD4 1205 aa30■■■□□ 2.39
PNKP-216ENST00000601816 FGBP02675 491 aa29.99■■■□□ 2.39
PNKP-216ENST00000601816 RTN1Q16799 776 aa29.99■■■□□ 2.39
PNKP-216ENST00000601816 SESTD1Q86VW0 696 aa29.99■■■□□ 2.39
PNKP-216ENST00000601816 HERVK_113Q902F9 699 aa29.99■■■□□ 2.39
PNKP-216ENST00000601816 GPKOWQ92917 476 aaPredicted RBP eCLIP29.99■■■□□ 2.39
PNKP-216ENST00000601816 INPP4AQ96PE3 977 aaPredicted RBP29.99■■■□□ 2.39
PNKP-216ENST00000601816 PSTPIP2Q9H939 334 aa29.99■■■□□ 2.39
PNKP-216ENST00000601816 F2P00734 622 aa29.98■■■□□ 2.39
PNKP-216ENST00000601816 ZNF286BP0CG31 522 aa29.98■■■□□ 2.39
PNKP-216ENST00000601816 HOXD8P13378 290 aaPredicted RBP29.98■■■□□ 2.39
PNKP-216ENST00000601816 PSEN2P49810 448 aa29.98■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms