RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 LY6KQ17RY6 165 aa17.48■□□□□ 0.39
LIG1-219ENST00000600055 GNASQ5JWF2 1037 aa17.48■□□□□ 0.39
LIG1-219ENST00000600055 PPP1R18Q6NYC8 613 aa17.48■□□□□ 0.39
LIG1-219ENST00000600055 CCDC62Q6P9F0 684 aa17.48■□□□□ 0.39
LIG1-219ENST00000600055 ZNF713Q8N859 430 aaPredicted RBP17.48■□□□□ 0.39
LIG1-219ENST00000600055 NECAB1Q8N987 351 aa17.48■□□□□ 0.39
LIG1-219ENST00000600055 AP5M1Q9H0R1 490 aa17.48■□□□□ 0.39
LIG1-219ENST00000600055 RIC8AQ9NPQ8 531 aa17.48■□□□□ 0.39
LIG1-219ENST00000600055 A0A1W2PQ45 241 aaPredicted RBP17.47■□□□□ 0.39
LIG1-219ENST00000600055 A0A1W2PQY0 241 aa17.47■□□□□ 0.39
LIG1-219ENST00000600055 ACLYP53396 1101 aa17.47■□□□□ 0.39
LIG1-219ENST00000600055 NKX3-2P78367 333 aa17.47■□□□□ 0.39
LIG1-219ENST00000600055 MRPS9P82933 396 aaKnown RBP17.47■□□□□ 0.39
LIG1-219ENST00000600055 TTLL4Q14679 1199 aa17.47■□□□□ 0.39
LIG1-219ENST00000600055 OR6J1Q8NGC5 347 aa17.47■□□□□ 0.39
LIG1-219ENST00000600055 PGBD1Q96JS3 809 aa17.47■□□□□ 0.39
LIG1-219ENST00000600055 TSEN34Q9BSV6 310 aaKnown RBP17.47■□□□□ 0.39
LIG1-219ENST00000600055 TMEM260Q9NX78 707 aa17.47■□□□□ 0.39
LIG1-219ENST00000600055 RTEL1Q9NZ71 1219 aa17.47■□□□□ 0.39
LIG1-219ENST00000600055 RBM27Q9P2N5 1060 aaKnown RBP17.47■□□□□ 0.39
LIG1-219ENST00000600055 PCDHA6Q9UN73 950 aa17.47■□□□□ 0.39
LIG1-219ENST00000600055 Q9Y3F1 56 aa17.47■□□□□ 0.39
LIG1-219ENST00000600055 PCDHA8Q9Y5H6 950 aa17.47■□□□□ 0.39
LIG1-219ENST00000600055 EVI5O60447 810 aa17.46■□□□□ 0.39
LIG1-219ENST00000600055 ASGR1P07306 291 aa17.46■□□□□ 0.39
LIG1-219ENST00000600055 FSCN1Q16658 493 aaKnown RBP17.46■□□□□ 0.39
LIG1-219ENST00000600055 SLC39A5Q6ZMH5 540 aa17.46■□□□□ 0.39
LIG1-219ENST00000600055 C7orf61Q8IZ16 206 aa17.46■□□□□ 0.39
LIG1-219ENST00000600055 AIFM3Q96NN9 605 aa17.46■□□□□ 0.39
LIG1-219ENST00000600055 VPS54Q9P1Q0 977 aa17.46■□□□□ 0.39
LIG1-219ENST00000600055 PCDH10Q9P2E7 1040 aa17.46■□□□□ 0.39
LIG1-219ENST00000600055 SPDYE3A6NKU9 549 aa17.45■□□□□ 0.38
LIG1-219ENST00000600055 NKRFO15226 690 aaKnown RBP eCLIP17.45■□□□□ 0.38
LIG1-219ENST00000600055 CTDNEP1O95476 244 aa17.45■□□□□ 0.38
LIG1-219ENST00000600055 CPLX2Q6PUV4 134 aaKnown RBP17.45■□□□□ 0.38
LIG1-219ENST00000600055 TRIM22Q8IYM9 498 aa17.45■□□□□ 0.38
LIG1-219ENST00000600055 PCSK9Q8NBP7 692 aaKnown RBP17.45■□□□□ 0.38
LIG1-219ENST00000600055 ZMYND12Q9H0C1 365 aa17.45■□□□□ 0.38
LIG1-219ENST00000600055 DDX41Q9UJV9 622 aaKnown RBP17.45■□□□□ 0.38
LIG1-219ENST00000600055 MRVI1Q9Y6F6 885 aa17.45■□□□□ 0.38
LIG1-219ENST00000600055 MOXD2PA6NHM9 499 aa17.44■□□□□ 0.38
LIG1-219ENST00000600055 SORBS3O60504 671 aa17.44■□□□□ 0.38
LIG1-219ENST00000600055 DEXIO95424 95 aa17.44■□□□□ 0.38
LIG1-219ENST00000600055 CLK2P49760 499 aaKnown RBP17.44■□□□□ 0.38
LIG1-219ENST00000600055 RTP1P59025 263 aa17.44■□□□□ 0.38
LIG1-219ENST00000600055 SP2Q02086 613 aa17.44■□□□□ 0.38
LIG1-219ENST00000600055 ST3GAL1Q11201 340 aa17.44■□□□□ 0.38
LIG1-219ENST00000600055 JAKMIP3Q5VZ66 844 aa17.44■□□□□ 0.38
LIG1-219ENST00000600055 PCNX4Q63HM2 1172 aa17.44■□□□□ 0.38
LIG1-219ENST00000600055 GTF3C6Q969F1 213 aa17.44■□□□□ 0.38
LIG1-219ENST00000600055 UPF2Q9HAU5 1272 aaKnown RBP17.44■□□□□ 0.38
LIG1-219ENST00000600055 ESYT2A0FGR8 921 aa17.43■□□□□ 0.38
LIG1-219ENST00000600055 H0YGN5 161 aa17.43■□□□□ 0.38
LIG1-219ENST00000600055 ARHGAP1Q07960 439 aa17.43■□□□□ 0.38
LIG1-219ENST00000600055 SEMA3FQ13275 785 aa17.43■□□□□ 0.38
LIG1-219ENST00000600055 TRIM60Q495X7 471 aa17.43■□□□□ 0.38
LIG1-219ENST00000600055 CXCL17Q6UXB2 119 aa17.43■□□□□ 0.38
LIG1-219ENST00000600055 CCDC12Q8WUD4 166 aaPredicted RBP17.43■□□□□ 0.38
LIG1-219ENST00000600055 VTI1AQ96AJ9 217 aa17.43■□□□□ 0.38
LIG1-219ENST00000600055 INPP4AQ96PE3 977 aaPredicted RBP17.43■□□□□ 0.38
LIG1-219ENST00000600055 ANO3Q9BYT9 981 aa17.43■□□□□ 0.38
LIG1-219ENST00000600055 BACH2Q9BYV9 841 aa17.43■□□□□ 0.38
LIG1-219ENST00000600055 BCAS3Q9H6U6 928 aa17.43■□□□□ 0.38
LIG1-219ENST00000600055 C6orf50Q9HD87 102 aa17.43■□□□□ 0.38
LIG1-219ENST00000600055 STARD7Q9NQZ5 370 aa17.43■□□□□ 0.38
LIG1-219ENST00000600055 ATP11BQ9Y2G3 1177 aa17.43■□□□□ 0.38
LIG1-219ENST00000600055 ALPK3Q96L96 1907 aa17.43■□□□□ 0.38
LIG1-219ENST00000600055 CDKL5O76039 1030 aa17.42■□□□□ 0.38
LIG1-219ENST00000600055 GH1P01241 217 aa17.42■□□□□ 0.38
LIG1-219ENST00000600055 MYL3P08590 195 aa17.42■□□□□ 0.38
LIG1-219ENST00000600055 SNX17Q15036 470 aa17.42■□□□□ 0.38
LIG1-219ENST00000600055 RASGRP4Q8TDF6 673 aa17.42■□□□□ 0.38
LIG1-219ENST00000600055 AFG1LQ8WV93 481 aa17.42■□□□□ 0.38
LIG1-219ENST00000600055 GLT1D1Q96MS3 346 aa17.42■□□□□ 0.38
LIG1-219ENST00000600055 TBC1D32Q96NH3 1257 aa17.42■□□□□ 0.38
LIG1-219ENST00000600055 GLT8D2Q9H1C3 349 aa17.42■□□□□ 0.38
LIG1-219ENST00000600055 ZMYND8Q9ULU4 1186 aaPredicted RBP17.42■□□□□ 0.38
LIG1-219ENST00000600055 LIMCH1Q9UPQ0 1083 aa17.42■□□□□ 0.38
LIG1-219ENST00000600055 NR2E3Q9Y5X4 410 aa17.42■□□□□ 0.38
LIG1-219ENST00000600055 SPATA31C2B4DYI2 1134 aa17.41■□□□□ 0.38
LIG1-219ENST00000600055 ZEB2O60315 1214 aa17.41■□□□□ 0.38
LIG1-219ENST00000600055 STAM2O75886 525 aa17.41■□□□□ 0.38
LIG1-219ENST00000600055 FOSP01100 380 aaPredicted RBP17.41■□□□□ 0.38
LIG1-219ENST00000600055 SYN1P17600 705 aa17.41■□□□□ 0.38
LIG1-219ENST00000600055 ITGB5P18084 799 aa17.41■□□□□ 0.38
LIG1-219ENST00000600055 UBA1P22314 1058 aaKnown RBP17.41■□□□□ 0.38
LIG1-219ENST00000600055 CPT1AP50416 773 aa17.41■□□□□ 0.38
LIG1-219ENST00000600055 NLRP5P59047 1200 aa17.41■□□□□ 0.38
LIG1-219ENST00000600055 AP3B2Q13367 1082 aa17.41■□□□□ 0.38
LIG1-219ENST00000600055 RABEP1Q15276 862 aa17.41■□□□□ 0.38
LIG1-219ENST00000600055 GNPTABQ3T906 1256 aa17.41■□□□□ 0.38
LIG1-219ENST00000600055 XRRA1Q6P2D8 792 aa17.41■□□□□ 0.38
LIG1-219ENST00000600055 CCDC148Q8NFR7 591 aa17.41■□□□□ 0.38
LIG1-219ENST00000600055 EHMT1Q9H9B1 1298 aa17.41■□□□□ 0.38
LIG1-219ENST00000600055 SH3GLB2Q9NR46 395 aa17.41■□□□□ 0.38
LIG1-219ENST00000600055 UBIAD1Q9Y5Z9 338 aa17.41■□□□□ 0.38
LIG1-219ENST00000600055 A6NJR5 290 aa17.4■□□□□ 0.38
LIG1-219ENST00000600055 JAK2O60674 1132 aa17.4■□□□□ 0.38
LIG1-219ENST00000600055 GGPS1O95749 300 aa17.4■□□□□ 0.38
LIG1-219ENST00000600055 FDPSP14324 419 aaKnown RBP17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms