RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 METAP2P50579 478 aaKnown RBP eCLIP16.28■□□□□ 0.2
LIG1-218ENST00000599322 AKAP17AQ02040 695 aaKnown RBP16.28■□□□□ 0.2
LIG1-218ENST00000599322 LAMC2Q13753 1193 aa16.28■□□□□ 0.2
LIG1-218ENST00000599322 Q6ZUG5 572 aa16.28■□□□□ 0.2
LIG1-218ENST00000599322 HEATR3Q7Z4Q2 680 aa16.28■□□□□ 0.2
LIG1-218ENST00000599322 DHX37Q8IY37 1157 aaKnown RBP16.28■□□□□ 0.2
LIG1-218ENST00000599322 CMTR1Q8N1G2 835 aaKnown RBP16.28■□□□□ 0.2
LIG1-218ENST00000599322 KCNB2Q92953 911 aa16.28■□□□□ 0.2
LIG1-218ENST00000599322 SPDYE3A6NKU9 549 aa16.27■□□□□ 0.2
LIG1-218ENST00000599322 hCG_1984214I3L0E3 225 aa16.27■□□□□ 0.2
LIG1-218ENST00000599322 KIAA0355O15063 1070 aa16.27■□□□□ 0.2
LIG1-218ENST00000599322 SUPT20HL2P0C7V6 817 aa16.27■□□□□ 0.2
LIG1-218ENST00000599322 TGFB3P10600 412 aa16.27■□□□□ 0.2
LIG1-218ENST00000599322 RPS6KB1P23443 525 aa16.27■□□□□ 0.2
LIG1-218ENST00000599322 IRX5P78411 483 aaPredicted RBP16.27■□□□□ 0.2
LIG1-218ENST00000599322 PGM5Q15124 567 aa16.27■□□□□ 0.2
LIG1-218ENST00000599322 XRRA1Q6P2D8 792 aa16.27■□□□□ 0.2
LIG1-218ENST00000599322 VSIG10LQ86VR7 867 aa16.27■□□□□ 0.2
LIG1-218ENST00000599322 ZNF713Q8N859 430 aaPredicted RBP16.27■□□□□ 0.2
LIG1-218ENST00000599322 GLT8D2Q9H1C3 349 aa16.27■□□□□ 0.2
LIG1-218ENST00000599322 CYP46A1Q9Y6A2 500 aa16.27■□□□□ 0.2
LIG1-218ENST00000599322 A6NJR5 290 aa16.26■□□□□ 0.19
LIG1-218ENST00000599322 DLL1O00548 723 aa16.26■□□□□ 0.19
LIG1-218ENST00000599322 OPLAHO14841 1288 aa16.26■□□□□ 0.19
LIG1-218ENST00000599322 CTAGE5O15320 804 aa16.26■□□□□ 0.19
LIG1-218ENST00000599322 CDK7P50613 346 aa16.26■□□□□ 0.19
LIG1-218ENST00000599322 LY6KQ17RY6 165 aa16.26■□□□□ 0.19
LIG1-218ENST00000599322 SLC35G1Q2M3R5 365 aa16.26■□□□□ 0.19
LIG1-218ENST00000599322 FAM47CQ5HY64 1035 aa16.26■□□□□ 0.19
LIG1-218ENST00000599322 TEX2Q8IWB9 1127 aa16.26■□□□□ 0.19
LIG1-218ENST00000599322 BADQ92934 168 aa16.26■□□□□ 0.19
LIG1-218ENST00000599322 BRF1Q92994 677 aa16.26■□□□□ 0.19
LIG1-218ENST00000599322 STXBP5LQ9Y2K9 1186 aa16.26■□□□□ 0.19
LIG1-218ENST00000599322 A0A0C4DFX4 3053 aa16.26■□□□□ 0.19
LIG1-218ENST00000599322 UNC80Q8N2C7 3258 aa16.25■□□□□ 0.19
LIG1-218ENST00000599322 PIK3CDO00329 1044 aa16.25■□□□□ 0.19
LIG1-218ENST00000599322 NAPAP54920 295 aa16.25■□□□□ 0.19
LIG1-218ENST00000599322 CHMP4BP1P59074 171 aa16.25■□□□□ 0.19
LIG1-218ENST00000599322 APOBRQ0VD83 1088 aa16.25■□□□□ 0.19
LIG1-218ENST00000599322 FAAP100Q0VG06 881 aa16.25■□□□□ 0.19
LIG1-218ENST00000599322 DGKDQ16760 1214 aa16.25■□□□□ 0.19
LIG1-218ENST00000599322 CCDC62Q6P9F0 684 aa16.25■□□□□ 0.19
LIG1-218ENST00000599322 NLRX1Q86UT6 975 aa16.25■□□□□ 0.19
LIG1-218ENST00000599322 TMEM199Q8N511 208 aa16.25■□□□□ 0.19
LIG1-218ENST00000599322 CCDC12Q8WUD4 166 aaPredicted RBP16.25■□□□□ 0.19
LIG1-218ENST00000599322 COPS5Q92905 334 aa16.25■□□□□ 0.19
LIG1-218ENST00000599322 MLXIPQ9HAP2 919 aa16.25■□□□□ 0.19
LIG1-218ENST00000599322 DDX41Q9UJV9 622 aaKnown RBP16.25■□□□□ 0.19
LIG1-218ENST00000599322 BRPF3Q9ULD4 1205 aa16.25■□□□□ 0.19
LIG1-218ENST00000599322 NOD1Q9Y239 953 aa16.25■□□□□ 0.19
LIG1-218ENST00000599322 V9GY48 417 aaPredicted RBP16.25■□□□□ 0.19
LIG1-218ENST00000599322 BAZ2BQ9UIF8 2168 aaKnown RBP16.24■□□□□ 0.19
LIG1-218ENST00000599322 hCG_1642624A0A1W2PR95 340 aa16.24■□□□□ 0.19
LIG1-218ENST00000599322 TRIM43BA6NCK2 446 aa16.24■□□□□ 0.19
LIG1-218ENST00000599322 TIMP1P01033 207 aa16.24■□□□□ 0.19
LIG1-218ENST00000599322 PURAQ00577 322 aaKnown RBP16.24■□□□□ 0.19
LIG1-218ENST00000599322 FPGSQ05932 587 aa16.24■□□□□ 0.19
LIG1-218ENST00000599322 TMEM63BQ5T3F8 832 aa16.24■□□□□ 0.19
LIG1-218ENST00000599322 PPP1R18Q6NYC8 613 aa16.24■□□□□ 0.19
LIG1-218ENST00000599322 CPLX2Q6PUV4 134 aaKnown RBP16.24■□□□□ 0.19
LIG1-218ENST00000599322 USP17L6PQ6QN14 398 aa16.24■□□□□ 0.19
LIG1-218ENST00000599322 RUFY3Q7L099 469 aa16.24■□□□□ 0.19
LIG1-218ENST00000599322 SH3RF1Q7Z6J0 888 aa16.24■□□□□ 0.19
LIG1-218ENST00000599322 FAM126BQ8IXS8 530 aa16.24■□□□□ 0.19
LIG1-218ENST00000599322 AFG1LQ8WV93 481 aa16.24■□□□□ 0.19
LIG1-218ENST00000599322 TRIM43Q96BQ3 446 aaPredicted RBP16.24■□□□□ 0.19
LIG1-218ENST00000599322 CDHR1Q96JP9 859 aa16.24■□□□□ 0.19
LIG1-218ENST00000599322 KATNAL1Q9BW62 490 aa16.24■□□□□ 0.19
LIG1-218ENST00000599322 USP26Q9BXU7 913 aa16.24■□□□□ 0.19
LIG1-218ENST00000599322 EYSQ5T1H1 3165 aa16.23■□□□□ 0.19
LIG1-218ENST00000599322 NOP56O00567 594 aaKnown RBP16.23■□□□□ 0.19
LIG1-218ENST00000599322 ARIH2O95376 493 aa16.23■□□□□ 0.19
LIG1-218ENST00000599322 FOSP01100 380 aaPredicted RBP16.23■□□□□ 0.19
LIG1-218ENST00000599322 CPA1P15085 419 aa16.23■□□□□ 0.19
LIG1-218ENST00000599322 PSMC6P62333 389 aa16.23■□□□□ 0.19
LIG1-218ENST00000599322 PTPN11Q06124 597 aaPredicted RBP16.23■□□□□ 0.19
LIG1-218ENST00000599322 PPIGQ13427 754 aaKnown RBP eCLIP16.23■□□□□ 0.19
LIG1-218ENST00000599322 NEDD9Q14511 834 aa16.23■□□□□ 0.19
LIG1-218ENST00000599322 FBXL16Q8N461 479 aa16.23■□□□□ 0.19
LIG1-218ENST00000599322 SLC43A3Q8NBI5 491 aa16.23■□□□□ 0.19
LIG1-218ENST00000599322 GIMAP8Q8ND71 665 aaPredicted RBP16.23■□□□□ 0.19
LIG1-218ENST00000599322 TM6SF1Q9BZW5 370 aa16.23■□□□□ 0.19
LIG1-218ENST00000599322 LCTP09848 1927 aa16.23■□□□□ 0.19
LIG1-218ENST00000599322 LRRC37A2A6NM11 1700 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 FIBPO43427 364 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 GGPS1O95749 300 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 MMP3P08254 477 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 PTGS1P23219 599 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 ADCY7P51828 1080 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 ARHGAP1Q07960 439 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 COL9A3Q14050 684 aaPredicted RBP16.22■□□□□ 0.19
LIG1-218ENST00000599322 SHHQ15465 462 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 C9orf50Q5SZB4 431 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 PCNX4Q63HM2 1172 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 MCTP2Q6DN12 878 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 FAM109BQ6ICB4 259 aaPredicted RBP16.22■□□□□ 0.19
LIG1-218ENST00000599322 MFSD5Q6N075 450 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 NFRKBQ6P4R8 1299 aa16.22■□□□□ 0.19
LIG1-218ENST00000599322 GPKOWQ92917 476 aaPredicted RBP eCLIP16.22■□□□□ 0.19
LIG1-218ENST00000599322 EMID1Q96A84 441 aaPredicted RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms