RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 CASTP20810 708 aaKnown RBP11.93□□□□□ -0.5
TRIM28-210ENST00000597618 HNRNPUQ00839 825 aaKnown RBP eCLIP11.93□□□□□ -0.5
TRIM28-210ENST00000597618 ZP2Q05996 745 aa11.93□□□□□ -0.5
TRIM28-210ENST00000597618 PTK7Q13308 1070 aa11.93□□□□□ -0.5
TRIM28-210ENST00000597618 TCTN1Q2MV58 587 aa11.93□□□□□ -0.5
TRIM28-210ENST00000597618 TSHZ3Q63HK5 1081 aa11.93□□□□□ -0.5
TRIM28-210ENST00000597618 CCDC62Q6P9F0 684 aa11.93□□□□□ -0.5
TRIM28-210ENST00000597618 POTEBQ6S5H4 581 aa11.93□□□□□ -0.5
TRIM28-210ENST00000597618 KAT2BQ92831 832 aa11.93□□□□□ -0.5
TRIM28-210ENST00000597618 PABPC5Q96DU9 382 aaKnown RBP11.93□□□□□ -0.5
TRIM28-210ENST00000597618 SNX27Q96L92 541 aa11.93□□□□□ -0.5
TRIM28-210ENST00000597618 SAMD11Q96NU1 681 aa11.93□□□□□ -0.5
TRIM28-210ENST00000597618 C17orf80Q9BSJ5 609 aa11.93□□□□□ -0.5
TRIM28-210ENST00000597618 KATNAL1Q9BW62 490 aa11.93□□□□□ -0.5
TRIM28-210ENST00000597618 SIP14410 1827 aa11.93□□□□□ -0.5
TRIM28-210ENST00000597618 FRMPD2Q68DX3 1309 aaPredicted RBP11.92□□□□□ -0.5
TRIM28-210ENST00000597618 EMSYQ7Z589 1322 aa11.92□□□□□ -0.5
TRIM28-210ENST00000597618 ORC4O43929 436 aa11.92□□□□□ -0.5
TRIM28-210ENST00000597618 LGR5O75473 907 aa11.92□□□□□ -0.5
TRIM28-210ENST00000597618 TOP1P11387 765 aaKnown RBP11.92□□□□□ -0.5
TRIM28-210ENST00000597618 CTDSPL2Q05D32 466 aa11.92□□□□□ -0.5
TRIM28-210ENST00000597618 ARHGAP1Q07960 439 aa11.92□□□□□ -0.5
TRIM28-210ENST00000597618 DGKDQ16760 1214 aa11.92□□□□□ -0.5
TRIM28-210ENST00000597618 BANK1Q8NDB2 785 aa11.92□□□□□ -0.5
TRIM28-210ENST00000597618 SP7Q8TDD2 431 aaPredicted RBP11.92□□□□□ -0.5
TRIM28-210ENST00000597618 SEC62Q99442 399 aaKnown RBP11.92□□□□□ -0.5
TRIM28-210ENST00000597618 UPF3BQ9BZI7 483 aaKnown RBP11.92□□□□□ -0.5
TRIM28-210ENST00000597618 GPCPD1Q9NPB8 672 aa11.92□□□□□ -0.5
TRIM28-210ENST00000597618 USP34Q70CQ2 3546 aa11.91□□□□□ -0.5
TRIM28-210ENST00000597618 HTRA4P83105 476 aaPredicted RBP11.91□□□□□ -0.5
TRIM28-210ENST00000597618 COL19A1Q14993 1142 aa11.91□□□□□ -0.5
TRIM28-210ENST00000597618 LY6KQ17RY6 165 aa11.91□□□□□ -0.5
TRIM28-210ENST00000597618 EPC2Q52LR7 807 aa11.91□□□□□ -0.5
TRIM28-210ENST00000597618 ZMYM1Q5SVZ6 1142 aa11.91□□□□□ -0.5
TRIM28-210ENST00000597618 TRAF7Q6Q0C0 670 aa11.91□□□□□ -0.5
TRIM28-210ENST00000597618 ADHFE1Q8IWW8 467 aa11.91□□□□□ -0.5
TRIM28-210ENST00000597618 MYOCDQ8IZQ8 938 aa11.91□□□□□ -0.5
TRIM28-210ENST00000597618 RGS22Q8NE09 1264 aa11.91□□□□□ -0.5
TRIM28-210ENST00000597618 MFSD14AQ96MC6 490 aa11.91□□□□□ -0.5
TRIM28-210ENST00000597618 FSD1Q9BTV5 496 aa11.91□□□□□ -0.5
TRIM28-210ENST00000597618 MAF1Q9H063 256 aa11.91□□□□□ -0.5
TRIM28-210ENST00000597618 HDAC6Q9UBN7 1215 aa11.91□□□□□ -0.5
TRIM28-210ENST00000597618 ANAPC4Q9UJX5 808 aa11.91□□□□□ -0.5
TRIM28-210ENST00000597618 ZNF318Q5VUA4 2279 aa11.91□□□□□ -0.5
TRIM28-210ENST00000597618 C5orf42Q9H799 3197 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 C19orf67A6NJJ6 358 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 H3BNC9 293 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 NCK2O43639 380 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 F2P00734 622 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 PDHBP11177 359 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 PSEN2P49810 448 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 MKRN4PQ13434 485 aaPredicted RBP11.9□□□□□ -0.5
TRIM28-210ENST00000597618 MBTPS1Q14703 1052 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 MFSD10Q14728 455 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 TRIM71Q2Q1W2 868 aaKnown RBP11.9□□□□□ -0.5
TRIM28-210ENST00000597618 TCEAL5Q5H9L2 206 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 ZNF618Q5T7W0 954 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.9□□□□□ -0.58e-10■□□□□ 10.4
TRIM28-210ENST00000597618 EP400NLQ6ZTU2 488 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 SEPT14Q6ZU15 432 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 HFE2Q6ZVN8 426 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 CHST3Q7LGC8 479 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 NSUN6Q8TEA1 469 aaKnown RBP11.9□□□□□ -0.5
TRIM28-210ENST00000597618 EMID1Q96A84 441 aaPredicted RBP11.9□□□□□ -0.5
TRIM28-210ENST00000597618 POP1Q99575 1024 aaKnown RBP11.9□□□□□ -0.5
TRIM28-210ENST00000597618 TMEM47Q9BQJ4 181 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 ALG1Q9BT22 464 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 NSUN3Q9H649 340 aaKnown RBP11.9□□□□□ -0.5
TRIM28-210ENST00000597618 INCENPQ9NQS7 918 aa11.9□□□□□ -0.5
TRIM28-210ENST00000597618 TRIP12Q14669 1992 aaPredicted RBP11.9□□□□□ -0.5
TRIM28-210ENST00000597618 TTC41PQ6P2S7 1318 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 FOXP2O15409 715 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 FGRP09769 529 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 ZNF543Q08ER8 600 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 GPM6BQ13491 265 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 STXBP2Q15833 593 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 KIAA0753Q2KHM9 967 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 USH1GQ495M9 461 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 FBXO11Q86XK2 927 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 PPTC7Q8NI37 304 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 IWS1Q96ST2 819 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 YME1L1Q96TA2 773 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 TOMM22Q9NS69 142 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 TCP11L1Q9NUJ3 509 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 COL4A6Q14031 1691 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 CFAP54Q96N23 3096 aa11.89□□□□□ -0.51
TRIM28-210ENST00000597618 RSPH10B2B2RC85 870 aa11.88□□□□□ -0.51
TRIM28-210ENST00000597618 HAS3O00219 553 aa11.88□□□□□ -0.51
TRIM28-210ENST00000597618 RSPH10BP0C881 870 aa11.88□□□□□ -0.51
TRIM28-210ENST00000597618 ZNF286BP0CG31 522 aa11.88□□□□□ -0.51
TRIM28-210ENST00000597618 SNHG28P0DPA3 235 aa11.88□□□□□ -0.51
TRIM28-210ENST00000597618 LAMC2Q13753 1193 aa11.88□□□□□ -0.51
TRIM28-210ENST00000597618 DHX37Q8IY37 1157 aaKnown RBP11.88□□□□□ -0.51
TRIM28-210ENST00000597618 TMEM192Q8IY95 271 aa11.88□□□□□ -0.51
TRIM28-210ENST00000597618 DBF4BQ8NFT6 615 aa11.88□□□□□ -0.51
TRIM28-210ENST00000597618 SYTL5Q8TDW5 730 aaPredicted RBP11.88□□□□□ -0.51
TRIM28-210ENST00000597618 WNT8BQ93098 351 aa11.88□□□□□ -0.51
TRIM28-210ENST00000597618 CLDND1Q9NY35 253 aa11.88□□□□□ -0.51
TRIM28-210ENST00000597618 DDX41Q9UJV9 622 aaKnown RBP11.88□□□□□ -0.51
TRIM28-210ENST00000597618 ABCB11O95342 1321 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms