RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	PIH1D3	Q9NQM4	214 aa	Known RBP	3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	ST7	Q9NRC1	585 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	CEP83	Q9Y592	693 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	KDM3B	Q7LBC6	1761 aa		3.88	□□□□□ -1.79
VMP1-216	ENST00000592790	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	KCNK3	O14649	394 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	SUN1	O94901	812 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	VIM	P08670	466 aa	Known RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	XRCC5	P13010	732 aa	Known RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	TNFAIP3	P21580	790 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	EIF4A3	P38919	411 aa	Known RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	STAT1	P42224	750 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	PRCP	P42785	496 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	ADCY2	Q08462	1091 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	C2orf54	Q08AI8	447 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	NAA25	Q14CX7	972 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	FAM26F	Q5R3K3	315 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	AGBL2	Q5U5Z8	902 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	PPP1R2P3	Q6NXS1	205 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	PPP1R18	Q6NYC8	613 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	ILDR1	Q86SU0	546 aa	Predicted RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	ARHGAP24	Q8N264	748 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	SPATA4	Q8NEY3	305 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	KIFAP3	Q92845	792 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	CAVIN3	Q969G5	261 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	ANKZF1	Q9H8Y5	726 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	GPHN	Q9NQX3	736 aa	Predicted RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	BATF3	Q9NR55	127 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	CCDC87	Q9NVE4	849 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	ANKIB1	Q9P2G1	1089 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	RIPOR2	Q9Y4F9	1068 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	TAF6L	Q9Y6J9	622 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	NID2	Q14112	1375 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	SETD1A	O15047	1707 aa	Known RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790		A0A1W2PRG0	241 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	SMCO2	A6NFE2	343 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	PPP1R3G	B7ZBB8	358 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	CES2	O00748	559 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	ATP5H	O75947	161 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	FAM13A	O94988	1023 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	IRAK1	P51617	712 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	RNASEL	Q05823	741 aa	Known RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	CUL4B	Q13620	913 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	ZKSCAN8	Q15776	578 aa	Predicted RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	ASPRV1	Q53RT3	343 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	C6orf118	Q5T5N4	469 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	KDM7A	Q6ZMT4	941 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	YTHDF3	Q7Z739	585 aa	Known RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	DNAJC10	Q8IXB1	793 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	KLHL7	Q8IXQ5	586 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	PPFIBP2	Q8ND30	876 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	GIMAP8	Q8ND71	665 aa	Predicted RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	HELB	Q8NG08	1087 aa	Predicted RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	FAM81B	Q96LP2	452 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	C7orf25	Q9BPX7	421 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	UBA5	Q9GZZ9	404 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	VCX	Q9H320	206 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	TAF1D	Q9H5J8	278 aa	Predicted RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	SH2D4A	Q9H788	454 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	PRDM16	Q9HAZ2	1276 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	PPAN	Q9NQ55	473 aa	Known RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	ARMCX3	Q9UH62	379 aa	Predicted RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	ODF2L	Q9ULJ1	636 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	KDM6A	O15550	1401 aa	Predicted RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	CACNA1G	O43497	2377 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	MED1	Q15648	1581 aa	Predicted RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	GMNC	A6NCL1	334 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	GSG1L2	A8MUP6	293 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	USP17L12	C9JPN9	530 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	USP17L21	D6R901	530 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	ATP1A1	P05023	1023 aa	Known RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	SMARCA1	P28370	1054 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	TXK	P42681	527 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	TNNI2	P48788	182 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	FXR1	P51114	621 aa	Known RBP eCLIP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	MDM2	Q00987	491 aa	Predicted RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	TFAP4	Q01664	338 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	FYB2	Q5VWT5	728 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	LRRC31	Q6UY01	552 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	DAAM2	Q86T65	1068 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	APLF	Q8IW19	511 aa	Predicted RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	SYCP3	Q8IZU3	236 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	LCORL	Q8N3X6	602 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	CCDC63	Q8NA47	563 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	MORC4	Q8TE76	937 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	TBC1D22A	Q8WUA7	517 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	STAM	Q92783	540 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	KRT12	Q99456	494 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	TUBB6	Q9BUF5	446 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	CPSF2	Q9P2I0	782 aa	Known RBP	3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	DNM3	Q9UQ16	869 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	ABCC6	O95255	1503 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	TNS3	Q68CZ2	1445 aa		3.87	□□□□□ -1.79
VMP1-216	ENST00000592790	SPDYE3	A6NKU9	549 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	MIF4GD	A9UHW6	222 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PODXL	O00592	558 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	TRIM66	O15016	1216 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	GAS8	O95995	478 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	CP	P00450	1065 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	ATP2A2	P16615	1042 aa	Known RBP	3.86	□□□□□ -1.79

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