RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 PPP2R5BQ15173 497 aa16.07■□□□□ 0.16
CLIP3-205ENST00000592017 ARHGEF16Q5VV41 709 aa16.07■□□□□ 0.16
CLIP3-205ENST00000592017 RUFY3Q7L099 469 aa16.07■□□□□ 0.16
CLIP3-205ENST00000592017 HEATR3Q7Z4Q2 680 aa16.07■□□□□ 0.16
CLIP3-205ENST00000592017 FCHSD1Q86WN1 690 aa16.07■□□□□ 0.16
CLIP3-205ENST00000592017 OR6J1Q8NGC5 347 aa16.07■□□□□ 0.16
CLIP3-205ENST00000592017 TRPV6Q9H1D0 765 aa16.07■□□□□ 0.16
CLIP3-205ENST00000592017 CNTNAP5Q8WYK1 1306 aa16.07■□□□□ 0.16
CLIP3-205ENST00000592017 TXNP10599 105 aaKnown RBP16.06■□□□□ 0.16
CLIP3-205ENST00000592017 FPGSQ05932 587 aa16.06■□□□□ 0.16
CLIP3-205ENST00000592017 MFSD5Q6N075 450 aa16.06■□□□□ 0.16
CLIP3-205ENST00000592017 C16orf59Q7L2K0 433 aa16.06■□□□□ 0.16
CLIP3-205ENST00000592017 IWS1Q96ST2 819 aa16.06■□□□□ 0.16
CLIP3-205ENST00000592017 ZSWIM6Q9HCJ5 1215 aa16.06■□□□□ 0.16
CLIP3-205ENST00000592017 PXMP2Q9NR77 195 aa16.06■□□□□ 0.16
CLIP3-205ENST00000592017 A6NJR5 290 aa16.05■□□□□ 0.16
CLIP3-205ENST00000592017 NKRFO15226 690 aaKnown RBP eCLIP16.05■□□□□ 0.16
CLIP3-205ENST00000592017 TLR3O15455 904 aaKnown RBP16.05■□□□□ 0.16
CLIP3-205ENST00000592017 NR3C2P08235 984 aa16.05■□□□□ 0.16
CLIP3-205ENST00000592017 MYL3P08590 195 aa16.05■□□□□ 0.16
CLIP3-205ENST00000592017 CDC27P30260 824 aa16.05■□□□□ 0.16
CLIP3-205ENST00000592017 CPT1AP50416 773 aa16.05■□□□□ 0.16
CLIP3-205ENST00000592017 RCAN1P53805 252 aa16.05■□□□□ 0.16
CLIP3-205ENST00000592017 PURAQ00577 322 aaKnown RBP16.05■□□□□ 0.16
CLIP3-205ENST00000592017 TTLL4Q14679 1199 aa16.05■□□□□ 0.16
CLIP3-205ENST00000592017 SEPT14Q6ZU15 432 aa16.05■□□□□ 0.16
CLIP3-205ENST00000592017 GPKOWQ92917 476 aaPredicted RBP eCLIP16.05■□□□□ 0.16
CLIP3-205ENST00000592017 PPP1R12CQ9BZL4 782 aa16.05■□□□□ 0.16
CLIP3-205ENST00000592017 MTMR10Q9NXD2 777 aa16.05■□□□□ 0.16
CLIP3-205ENST00000592017 LTBP2Q14767 1821 aa16.05■□□□□ 0.16
CLIP3-205ENST00000592017 EIF5BO60841 1220 aaKnown RBP16.04■□□□□ 0.16
CLIP3-205ENST00000592017 EIF3JO75822 258 aaKnown RBP16.04■□□□□ 0.16
CLIP3-205ENST00000592017 MYCLP12524 364 aaPredicted RBP16.04■□□□□ 0.16
CLIP3-205ENST00000592017 CYP2C18P33260 490 aa16.04■□□□□ 0.16
CLIP3-205ENST00000592017 ADD1P35611 737 aaKnown RBP16.04■□□□□ 0.16
CLIP3-205ENST00000592017 ARHGAP1Q07960 439 aa16.04■□□□□ 0.16
CLIP3-205ENST00000592017 STXBP2Q15833 593 aa16.04■□□□□ 0.16
CLIP3-205ENST00000592017 LY6KQ17RY6 165 aa16.04■□□□□ 0.16
CLIP3-205ENST00000592017 SMARCC2Q8TAQ2 1214 aa16.04■□□□□ 0.16
CLIP3-205ENST00000592017 PPP1R13LQ8WUF5 828 aa16.04■□□□□ 0.16
CLIP3-205ENST00000592017 CUL5Q93034 780 aa16.04■□□□□ 0.16
CLIP3-205ENST00000592017 LARP6Q9BRS8 491 aaKnown RBP16.04■□□□□ 0.16
CLIP3-205ENST00000592017 MTG1Q9BT17 334 aaPredicted RBP16.04■□□□□ 0.16
CLIP3-205ENST00000592017 TM6SF1Q9BZW5 370 aa16.04■□□□□ 0.16
CLIP3-205ENST00000592017 ALDH8A1Q9H2A2 487 aaPredicted RBP16.04■□□□□ 0.16
CLIP3-205ENST00000592017 FAM217BQ9NTX9 383 aaPredicted RBP16.04■□□□□ 0.16
CLIP3-205ENST00000592017 PDRG1Q9NUG6 133 aa16.04■□□□□ 0.16
CLIP3-205ENST00000592017 POLR3EQ9NVU0 708 aa16.04■□□□□ 0.16
CLIP3-205ENST00000592017 MAP3K20Q9NYL2 800 aaKnown RBP16.04■□□□□ 0.16
CLIP3-205ENST00000592017 UMODL1Q5DID0 1318 aa16.03■□□□□ 0.16
CLIP3-205ENST00000592017 CCDC196A0A1B0GTZ2 297 aa16.03■□□□□ 0.16
CLIP3-205ENST00000592017 B4GALT4O60513 344 aa16.03■□□□□ 0.16
CLIP3-205ENST00000592017 SEC24BO95487 1268 aa16.03■□□□□ 0.16
CLIP3-205ENST00000592017 CSF2RAP15509 400 aa16.03■□□□□ 0.16
CLIP3-205ENST00000592017 TOB2Q14106 344 aaPredicted RBP16.03■□□□□ 0.16
CLIP3-205ENST00000592017 FAM109BQ6ICB4 259 aaPredicted RBP16.03■□□□□ 0.16
CLIP3-205ENST00000592017 SAMD3Q8N6K7 520 aa16.03■□□□□ 0.16
CLIP3-205ENST00000592017 IL31RAQ8NI17 732 aa16.03■□□□□ 0.16
CLIP3-205ENST00000592017 AFG1LQ8WV93 481 aa16.03■□□□□ 0.16
CLIP3-205ENST00000592017 RNPC3Q96LT9 517 aaKnown RBP16.03■□□□□ 0.16
CLIP3-205ENST00000592017 PDCD2LQ9BRP1 358 aa16.03■□□□□ 0.16
CLIP3-205ENST00000592017 SEZ6LQ9BYH1 1024 aa16.03■□□□□ 0.16
CLIP3-205ENST00000592017 AGXT2Q9BYV1 514 aa16.03■□□□□ 0.16
CLIP3-205ENST00000592017 DDX41Q9UJV9 622 aaKnown RBP16.03■□□□□ 0.16
CLIP3-205ENST00000592017 V9GY48 417 aaPredicted RBP16.03■□□□□ 0.16
CLIP3-205ENST00000592017 COL6A3P12111 3177 aa16.02■□□□□ 0.16
CLIP3-205ENST00000592017 MYH6P13533 1939 aa16.02■□□□□ 0.16
CLIP3-205ENST00000592017 KPNA6O60684 536 aa16.02■□□□□ 0.16
CLIP3-205ENST00000592017 RGS20O76081 388 aa16.02■□□□□ 0.16
CLIP3-205ENST00000592017 NAPAP54920 295 aa16.02■□□□□ 0.16
CLIP3-205ENST00000592017 CCT2P78371 535 aaKnown RBP16.02■□□□□ 0.16
CLIP3-205ENST00000592017 FUT2Q10981 343 aa16.02■□□□□ 0.16
CLIP3-205ENST00000592017 NBPF20Q3BBV1 942 aa16.02■□□□□ 0.16
CLIP3-205ENST00000592017 BRDTQ58F21 947 aaPredicted RBP16.02■□□□□ 0.16
CLIP3-205ENST00000592017 WWC2Q6AWC2 1192 aa16.02■□□□□ 0.16
CLIP3-205ENST00000592017 USP17L6PQ6QN14 398 aa16.02■□□□□ 0.16
CLIP3-205ENST00000592017 VSIG10LQ86VR7 867 aa16.02■□□□□ 0.16
CLIP3-205ENST00000592017 FBXL16Q8N461 479 aa16.02■□□□□ 0.16
CLIP3-205ENST00000592017 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.02■□□□□ 0.16
CLIP3-205ENST00000592017 NOC4LQ9BVI4 516 aaKnown RBP16.02■□□□□ 0.16
CLIP3-205ENST00000592017 HIPK3Q9H422 1215 aa16.02■□□□□ 0.16
CLIP3-205ENST00000592017 TRMT13Q9NUP7 481 aaKnown RBP16.02■□□□□ 0.16
CLIP3-205ENST00000592017 NID2Q14112 1375 aa16.01■□□□□ 0.15
CLIP3-205ENST00000592017 PPFIA3O75145 1194 aa16.01■□□□□ 0.15
CLIP3-205ENST00000592017 GH1P01241 217 aa16.01■□□□□ 0.15
CLIP3-205ENST00000592017 ACRP10323 421 aa16.01■□□□□ 0.15
CLIP3-205ENST00000592017 PDIA3P30101 505 aaKnown RBP16.01■□□□□ 0.15
CLIP3-205ENST00000592017 CCND2P30279 289 aa16.01■□□□□ 0.15
CLIP3-205ENST00000592017 ANAPC15P60006 121 aa16.01■□□□□ 0.15
CLIP3-205ENST00000592017 SMAD3P84022 425 aaKnown RBP16.01■□□□□ 0.15
CLIP3-205ENST00000592017 STK3Q13188 491 aa16.01■□□□□ 0.15
CLIP3-205ENST00000592017 PPIGQ13427 754 aaKnown RBP eCLIP16.01■□□□□ 0.15
CLIP3-205ENST00000592017 PGM5Q15124 567 aa16.01■□□□□ 0.15
CLIP3-205ENST00000592017 UBE2SQ16763 222 aa16.01■□□□□ 0.15
CLIP3-205ENST00000592017 TMEM240Q5SV17 173 aa16.01■□□□□ 0.15
CLIP3-205ENST00000592017 TMEM199Q8N511 208 aa16.01■□□□□ 0.15
CLIP3-205ENST00000592017 ZFP91Q96JP5 570 aaPredicted RBP16.01■□□□□ 0.15
CLIP3-205ENST00000592017 PSTPIP2Q9H939 334 aa16.01■□□□□ 0.15
CLIP3-205ENST00000592017 NCOA5Q9HCD5 579 aaKnown RBP16.01■□□□□ 0.15
CLIP3-205ENST00000592017 MMP3P08254 477 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms